PDB entry 6g0l

View 6g0l on RCSB PDB site
Description: structure of two molecules of the chromatin remodelling enzyme chd1 bound to a nucleosome
Deposited on 2018-03-19, released 2018-08-22
The last revision was dated 2018-11-21, with a file datestamp of 2018-11-16.
Experiment type: EM
Resolution: 10 Å
R-factor: N/A
AEROSPACI score: -0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histone h3
    Species: Xenopus laevis [TaxId:8355]
    Gene: hist1h3g, H3l
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Histone H2A type 1
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06897
      • conflict (99)
      • conflict (106)
  • Chain 'D':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18028549mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: histone h3
    Species: Xenopus laevis [TaxId:8355]
    Gene: hist1h3g, H3l
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Histone H2A type 1
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06897
      • conflict (99)
  • Chain 'H':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18028549mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA (176-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'J':
    Compound: DNA (177-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'M':
    Compound: Chromo domain-containing protein 1
    Species: SACCHAROMYCES CEREVISIAE S288C [TaxId:559292]
    Gene: CHD1, YER164W, SYGP-ORF4
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: Chromo domain-containing protein 1
    Species: SACCHAROMYCES CEREVISIAE S288C [TaxId:559292]
    Gene: CHD1, YER164W, SYGP-ORF4
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ADP, BEF

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6g0lA (A:)
    martkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkste
    llirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlcgihakrvti
    mpkdiqlarrirgera
    

    Sequence, based on observed residues (ATOM records):
    >6g0lA (A:)
    phryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqease
    aylvglfedtnlcgihakrvtimpkdiqlarrirger
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6g0lB (B:)
    msgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlk
    vflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
    

    Sequence, based on observed residues (ATOM records):
    >6g0lB (B:)
    kvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrk
    tvtamdvvyalkrqgrtlygfgg
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6g0lC (C:)
    msgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylt
    aeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqgrvlpniqsvllpkk
    tesaksaksk
    

    Sequence, based on observed residues (ATOM records):
    >6g0lC (C:)
    trssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkk
    triiprhlqlavrndeelnkllgrvtiaqgrvlpniqsvllpk
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6g0lD (D:)
    mpdpaksapaakkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskam
    simnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavt
    kytsak
    

    Sequence, based on observed residues (ATOM records):
    >6g0lD (D:)
    ktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstit
    sreiqtavrlllpgelakhavsegtkavtkytsak
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6g0lE (E:)
    martkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkste
    llirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlcgihakrvti
    mpkdiqlarrirgera
    

    Sequence, based on observed residues (ATOM records):
    >6g0lE (E:)
    hryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeasea
    ylvglfedtnlcgihakrvtimpkdiqlarrirgera
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6g0lF (F:)
    msgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlk
    vflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
    

    Sequence, based on observed residues (ATOM records):
    >6g0lF (F:)
    gkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdav
    tytehakrktvtamdvvyalkrqgrtlygfgg
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6g0lG (G:)
    msgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylt
    aeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk
    tesaksaksk
    

    Sequence, based on observed residues (ATOM records):
    >6g0lG (G:)
    aktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardn
    kktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6g0lH (H:)
    mpdpaksapaakkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskam
    simnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavt
    kytsak
    

    Sequence, based on observed residues (ATOM records):
    >6g0lH (H:)
    trkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstits
    reiqtavrlllpgelakhavsegtkavtkytsa
    

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6g0lM (M:)
    maakdistevlqnpelyglrrshraaahqqnyfndsddeddednikqsrrkrmttiedde
    defedeegeedsgededeedfeedddyygspikqnrskpksrtkskskskpksqsekqst
    vkiptrfsnrqnktvnynidysdddlleseddygseealseenvheasanpqpedfhgid
    ivinhrlktsleegkvlektvpdlnnckenyeflikwtdeshlhntwetyesigqvrglk
    rldnyckqfiiedqqvrldpyvtaedieimdmererrldefeefhvperiidsqrasled
    gtsqlqylvkwrrlnydeatwenatdivklapeqvkhfqnrenskilpqyssnytsqrpr
    feklsvqppfikggelrdfqltginwmaflwskgdngilademglgktvqtvafiswlif
    arrqngphiivvplstmpawldtfekwapdlncicymgnqksrdtireyefytnprakgk
    ktmkfnvllttyeyilkdraelgsikwqfmavdeahrlknaesslyeslnsfkvanrmli
    tgtplqnnikelaalvnflmpgrftidqeidfenqdeeqeeyihdlhrriqpfilrrlkk
    dvekslpskterilrvelsdvqteyykniltknysaltagakgghfsllnimnelkkasn
    hpylfdnaeervlqkfgdgkmtrenvlrglimssgkmvlldqlltrlkkdghrvlifsqm
    vrmldilgdylsikginfqrldgtvpsaqrrisidhfnspdsndfvfllstragglginl
    mtadtvvifdsdwnpqadlqamarahrigqknhvmvyrlvskdtveeevlerarkkmile
    yaiislgvtdgnkytkknepnagelsailkfgagnmftatdnqkkledlnlddvlnhaed
    hvttpdlgeshlggeeflkqfevtdykadidwddiipeeelkklqdeeqkrkdeeyvkeq
    lemmnrrdnalkkiknsvngdgtaansdsdddstsrssrrrarandmdsigesevralyk
    ailkfgnlkeildeliadgtlpvksfekygetydemmeaakdcvheeeknrkeileklek
    hatayraklksgeikaenqpkdnpltrlslkkrekkavlfnfkgvkslnaesllsrvedl
    kylknlinsnykddplkfslgnntpkpvqnwssnwtkeedeklligvfkygygswtqird
    dpflgitdkiflnevhnpvakksasssdttptpskkgkgitgsskkvpgaihlgrrvdyl
    lsflrgglntkspsadigskklptgpskkrqrkpanhsksmtpeitssepangppskrmk
    alpkgpaalinntrlspnsptpplkskvsrdngtrqssnpssgsahekeydsmdeedcrh
    tmsairtslkrlrrggksldrkewakilktelttignhiesqkgssrkaspekyrkhlws
    ysanfwpadvkstklmamydkitesqkk
    

    Sequence, based on observed residues (ATOM records):
    >6g0lM (M:)
    dfhgidivinhrlktsktvpdlnnckenyeflikwtdeshlhntwetyesigqvrglkrl
    dnyckqfiiedqqvrldpyvtaedieimdmererrldefeefhvperiidsqrasledgt
    sqlqylvkwrrlnydeatwenatdivklapeqvkhfqnrenskilpqyssnytsqrprfe
    klsvqppfikggelrdfqltginwmaflwskgdngilademglgktvqtvafiswlifar
    rqngphiivvplstmpawldtfekwapdlncicymgnqksrdtireyefytnpktmkfnv
    llttyeyilkdraelgsikwqfmavdeahrlknaesslyeslnsfkvanrmlitgtplqn
    nikelaalvnflmpgrfnqdeeqeeyihdlhrriqpfilrrlkkdvekslpskterilrv
    elsdvqteyykniltknysimnelkkasnhpylfdnaeervlqkfmtrenvlrglimssg
    kmvlldqlltrlkkdghrvlifsqmvrmldilgdylsikginfqrldgtvpsaqrrisid
    hfnspdsndfvfllstragglginlmtadtvvifdsdwnpqadlqamarahrigqknhvm
    vyrlvskdtveeevlerarkkmileydmdsigesevralykailkfgnlkeildeliadg
    tlpvksfekygetydemmeaakdcvheeeknrkeileklekhatayraklksgeikaenq
    pkdnpltrlslkkrekkavlfnfkgvkslnaesllsrvedlkylknlinsnykddplkfs
    lgnntpkpvqnwssnwtkeedeklligvfkygygswtqirddpflgitdkiflkkvpgai
    hlgrrvdyllsflrg
    

  • Chain 'W':
    Sequence, based on SEQRES records:
    >6g0lW (W:)
    maakdistevlqnpelyglrrshraaahqqnyfndsddeddednikqsrrkrmttiedde
    defedeegeedsgededeedfeedddyygspikqnrskpksrtkskskskpksqsekqst
    vkiptrfsnrqnktvnynidysdddlleseddygseealseenvheasanpqpedfhgid
    ivinhrlktsleegkvlektvpdlnnckenyeflikwtdeshlhntwetyesigqvrglk
    rldnyckqfiiedqqvrldpyvtaedieimdmererrldefeefhvperiidsqrasled
    gtsqlqylvkwrrlnydeatwenatdivklapeqvkhfqnrenskilpqyssnytsqrpr
    feklsvqppfikggelrdfqltginwmaflwskgdngilademglgktvqtvafiswlif
    arrqngphiivvplstmpawldtfekwapdlncicymgnqksrdtireyefytnprakgk
    ktmkfnvllttyeyilkdraelgsikwqfmavdeahrlknaesslyeslnsfkvanrmli
    tgtplqnnikelaalvnflmpgrftidqeidfenqdeeqeeyihdlhrriqpfilrrlkk
    dvekslpskterilrvelsdvqteyykniltknysaltagakgghfsllnimnelkkasn
    hpylfdnaeervlqkfgdgkmtrenvlrglimssgkmvlldqlltrlkkdghrvlifsqm
    vrmldilgdylsikginfqrldgtvpsaqrrisidhfnspdsndfvfllstragglginl
    mtadtvvifdsdwnpqadlqamarahrigqknhvmvyrlvskdtveeevlerarkkmile
    yaiislgvtdgnkytkknepnagelsailkfgagnmftatdnqkkledlnlddvlnhaed
    hvttpdlgeshlggeeflkqfevtdykadidwddiipeeelkklqdeeqkrkdeeyvkeq
    lemmnrrdnalkkiknsvngdgtaansdsdddstsrssrrrarandmdsigesevralyk
    ailkfgnlkeildeliadgtlpvksfekygetydemmeaakdcvheeeknrkeileklek
    hatayraklksgeikaenqpkdnpltrlslkkrekkavlfnfkgvkslnaesllsrvedl
    kylknlinsnykddplkfslgnntpkpvqnwssnwtkeedeklligvfkygygswtqird
    dpflgitdkiflnevhnpvakksasssdttptpskkgkgitgsskkvpgaihlgrrvdyl
    lsflrgglntkspsadigskklptgpskkrqrkpanhsksmtpeitssepangppskrmk
    alpkgpaalinntrlspnsptpplkskvsrdngtrqssnpssgsahekeydsmdeedcrh
    tmsairtslkrlrrggksldrkewakilktelttignhiesqkgssrkaspekyrkhlws
    ysanfwpadvkstklmamydkitesqkk
    

    Sequence, based on observed residues (ATOM records):
    >6g0lW (W:)
    dfhgidivinhrlktsktvpdlnnckenyeflikwtdeshlhntwetyesigqvrglkrl
    dnyckqfiiedqqvrldpyvtaedieimdmererrldefeefhvperiidsqrasledgt
    sqlqylvkwrrlnydeatwenatdivklapeqvkhfqnrenskilpqyssnytsqrprfe
    klsvqppfikggelrdfqltginwmaflwskgdngilademglgktvqtvafiswlifar
    rqngphiivvplstmpawldtfekwapdlncicymgnqksrdtireyefytnprakgkkt
    mkfnvllttyeyilkdraelgsikwqfmavdeahrlknaesslyeslnsfkvanrmlitg
    tplqnnikelaalvnflmpgrfnqdeeqeeyihdlhrriqpfilrrlkkdvekslpskte
    rilrvelsdvqteyykniltknysaltagakgghfsllnimnelkkasnhpylfdnaeer
    vlqkfmtrenvlrglimssgkmvlldqlltrlkkdghrvlifsqmvrmldilgdylsikg
    infqrldgtvpsaqrrisidhfnspdsndfvfllstragglginlmtadtvvifdsdwnp
    qadlqamarahrigqknhvmvyrlvskdtveeevlerarkkmileydmdsigesevraly
    kailkfgnlkeildeliadgtlpvksfekygetydemmeaakdcvheeeknrkeilekle
    khatayraklksgeikaenqpkdnpltrlslkkrekkavlfnfkgvkslnaesllsrved
    lkylknlinsnykddplkfslgnntpkpvqnwssnwtkeedeklligvfkygygswtqir
    ddpflgitdkiflkkvpgaihlgrrvdyllsflrggln