PDB entry 6fyw

View 6fyw on RCSB PDB site
Description: Structure of B/Brisbane/60/2008 Influenza Hemagglutinin in complex with SD83
Class: viral protein
Keywords: Influenza, single domain antibody, hemagglutinin, VIRAL PROTEIN
Deposited on 2018-03-12, released 2018-11-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: INFLUENZA B VIRUS (B/BRISBANE/60/2008) [TaxId:604436]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6fywa_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: INFLUENZA B VIRUS (B/BRISBANE/60/2008) [TaxId:604436]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Single domain antibody SD83
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FYW (0-128)
    Domains in SCOPe 2.08: d6fywc_
  • Heterogens: NAG, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6fywA (A:)
drictgitssnsphvvktatqgevnvtgvipltttptkshfanlkgtetrgklcpkclnc
tdldvalgrpkctgkipsarvsilhevrpvtsgcfpimhdrtkirqlpnllrgyehirls
thnvinaenapggpykigtsgscpnitngngffatmawavpkndknktatnpltievpyi
ctegedqitvwgfhsdnetqmaklygdskpqkftssangvtthyvsqiggfpnqtedggl
pqsgrivvdymvqksgktgtityqrgillpqkvwcasgrskvikgslpligeadclheky
gglnkskpyytgehakaigncpiwvktplklangtkyrppakllker

    Sequence, based on observed residues (ATOM records): (download) 
    >6fywA (A:)
tgitssnsphvvktatqgevnvtgvipltttptkshfanlkgtetrgklcpkclnctdld
valgrpkctgkipsarvsilhevrpvtsgcfpimhdrtkirqlpnllrgyehirlsthnv
inaenapggpykigtsgscpnitngngffatmawavpkndknktatnpltievpyicteg
edqitvwgfhsdnetqmaklygdskpqkftssangvtthyvsqiggfpnqtedgglpqsg
rivvdymvqksgktgtityqrgillpqkvwcasgrskvikgslpligeadclhekyggln
kskpyytgehakaigncpiwvktplklangtkyrpp

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6fywC (C:)
evqlvesggglvqpggslrlscaatgftlenkaigwfrqtpgseregvlcisksgswtyy
tdsmrgrftisrdnaentvylqmdslkpedtavyycatttaggglcwdgttfsrlasswg
qgtqvtvss