PDB entry 6fyt

View 6fyt on RCSB PDB site
Description: Structure of H1 (A/solomon Islands/3/06) Influenza Hemagglutinin in complex with SD38
Class: viral protein
Keywords: Influenza, single domain antibody, hemagglutinin, VIRAL PROTEIN
Deposited on 2018-03-12, released 2018-11-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/Solomon Islands/3/2006(H1N1)) [TaxId:464623]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7Y8I1
      • conflict (3)
      • conflict (46)
    Domains in SCOPe 2.08: d6fyta_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/Solomon Islands/3/2006(H1N1)) [TaxId:464623]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6fytb_
  • Chain 'I':
    Compound: Single domain antibody SD38
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FYT (0-123)
    Domains in SCOPe 2.08: d6fyti_
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6fytA (A:)
adpgdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgncs
vagwilgnpecellisreswsyivekpnpengtcypghfadyeelreqlssvssferfei
fpkesswpnhtttgvsascshngessfyknllwltgknglypnlsksyannkekevlvlw
gvhhppnigdqralyhkenayvsvvsshysrkftpeiakrpkvrdqegrinyywtllepg
dtiifeangnliapryafalsrgfgsgiinsnapmdecdakcqtpqgainsslpfqnvhp
vtigecpkyvrsaklrmvtglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >6fytA (A:)
gdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgncsvag
wilgnpecellisreswsyivekpnpengtcypghfadyeelreqlssvssferfeifpk
esswpnhtttgvsascshngessfyknllwltgknglypnlsksyannkekevlvlwgvh
hppnigdqralyhkenayvsvvsshysrkftpeiakrpkvrdqegrinyywtllepgdti
ifeangnliapryafalsrgfgsgiinsnapmdecdakcqtpqgainsslpfqnvhpvti
gecpkyvrsaklrmvtglrnip

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6fytB (B:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmn
tqftavgkefnklerrmenlnkkvddgfidiwtynaellvllenertldfhdsnvknlye
kvksqlknnakeigngcfefyhkcndecmesvkngtydypkyseesklnrekid

    Sequence, based on observed residues (ATOM records): (download) 
    >6fytB (B:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmn
tqftavgkefnklerrmenlnkkvddgfidiwtynaellvllenertldfhdsnvknlye
kvksqlknnakeigngcfefyhkcndecmesvkngtydypkyseesklnreki

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6fytI (I:)
evqlvesggglvqpggslrlscavsisifdiyamdwyrqapgkqrdlvatsfrdgstnya
dsvkgrftisrdnakntlylqmnslkpedtavylchvslyrdplgvaggmgvywgkgalv
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