PDB entry 6fxt

View 6fxt on RCSB PDB site
Description: crystal structure of full-length human lysyl hydroxylase lh3 - cocrystal with fe2+, mn2+, udp-glc
Deposited on 2018-03-09, released 2018-08-22
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
    Species: Homo sapiens [TaxId:9606]
    Gene: PLOD3
    Database cross-references and differences (RAF-indexed):
  • Heterogens: AKG, FE2, MN, UDP, GOL, NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fxtA (A:)
    ssdrprgrdpvnpekllvitvataetegylrflrsaeffnytvrtlglgeewrggdvart
    vgggqkvrwlkkemekyadredmiimfvdsydvilagsptellkkfvqsgsrllfsaesf
    cwpewglaeqypevgtgkrflnsggfigfattihqivrqwkykdddddqlfytrlyldpg
    lreklslnldhksrifqnlngaldevvlkfdrnrvrirnvaydtlpivvhgngptklqln
    ylgnyvpngwtpeggcgfcnqdrrtlpggqppprvflavfveqptpflprflqrlllldy
    ppdrvtlflhnnevfhephiadswpqlqdhfsavklvgpeealspgeardmamdlcrqdp
    ecefyfsldadavltnlqtlrilieenrkviapmlsrhgklwsnfwgalspdeyyarsed
    yvelvqrkrvgvwnvpyisqayvirgdtlrmelpqrdvfsgsdtdpdmafcksfrdkgif
    lhlsnqhefgrllatsrydtehlhpdlwqifdnpvdwkeqyihenysralegegiveqpc
    pdvywfpllseqmcdelvaemehygqwsggrhedsrlaggyenvptvdihmkqvgyedqw
    lqllrtyvgpmteslfpgyhtkaravmnfvvryrpdeqpslrphhdsstftlnvalnhkg
    ldyegggcrflrydcvissprkgwallhpgrlthyheglpttwgtryimvsfvdpaaa
    

    Sequence, based on observed residues (ATOM records):
    >6fxtA (A:)
    pvnpekllvitvataetegylrflrsaeffnytvrtlglgeewrggdvartvgggqkvrw
    lkkemekyadredmiimfvdsydvilagsptellkkfvqsgsrllfsaesfcwpewglae
    qypevgtgkrflnsggfigfattihqivrqwkykdddddqlfytrlyldpglreklslnl
    dhksrifqnlngaldevvlkfdrnrvrirnvaydtlpivvhgngptklqlnylgnyvpng
    wtpeggcgfcnqdrqppprvflavfveqptpflprflqrlllldyppdrvtlflhnnevf
    hephiadswpqlqdhfsavklvgpeealspgeardmamdlcrqdpecefyfsldadavlt
    nlqtlrilieenrkviapmlsrhgklwsnfwgalspdeyyarsedyvelvqrkrvgvwnv
    pyisqayvirgdtlrmelpqrdvfsgsdtdpdmafcksfrdkgiflhlsnqhefgrllat
    srydtehlhpdlwqifdnpvdwkeqyihenysralegegiveqpcpdvywfpllseqmcd
    elvaemehygqwsggrhedsrlaggyenvptvdihmkqvgyedqwlqllrtyvgpmtesl
    fpgyhtkaravmnfvvryrpdeqpslrphhdsstftlnvalnhkgldyegggcrflrydc
    vissprkgwallhpgrlthyheglpttwgtryimvsfvdp