PDB entry 6fvo

View 6fvo on RCSB PDB site
Description: mutant dna polymerase sliding clamp from mycobacterium tuberculosis with bound p7 peptide
Deposited on 2018-03-04, released 2019-04-10
The last revision was dated 2019-04-10, with a file datestamp of 2019-04-05.
Experiment type: XRAY
Resolution: 2.69 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta sliding clamp
    Species: Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) [TaxId:83331]
    Gene: dnaN, MT0002
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WNU0
      • conflict (361)
  • Chain 'B':
    Compound: Beta sliding clamp
    Species: Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) [TaxId:83331]
    Gene: dnaN, MT0002
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WNU0
      • conflict (361)
  • Chain 'C':
    Compound: Beta sliding clamp
    Species: Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) [TaxId:83331]
    Gene: dnaN, MT0002
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WNU0
      • conflict (361)
  • Chain 'D':
    Compound: Beta sliding clamp
    Species: Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) [TaxId:83331]
    Gene: dnaN, MT0002
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WNU0
      • conflict (361)
  • Chain 'H':
    Compound: P7 peptide
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FVO (Start-4)
  • Chain 'I':
    Compound: P7 peptide
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FVO (Start-4)
  • Chain 'J':
    Compound: P7 peptide
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FVO (Start-4)
  • Chain 'K':
    Compound: P7 peptide
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FVO (Start-4)
  • Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fvoA (A:)
mdaattrvgltdltfrllresfadavswvaknlparpavpvlsgvlltgsdngltisgfd
yevsaeaqvgaeivspgsvlvsgrllsditralpnkpvdvhvegnrvaltcgnarfslpt
mpvedyptlptlpeetgllpaelfaeaisqvaiaagrddtlpmltgirveilgetvvlaa
tdrfrlavrelkwsasspdieaavlvpaktlaeaakagiggsdvrlslgtgpgvgkdgll
gisgngkrsttrlldaefpkfrqllptehtavatmdvaelieaiklvalvadrgaqvrme
fadgsvrlsagaddvgraeedlvvdyagepltiafnptyltdglsslrservsfgfttag
ksallrpvsgddrpvaglngngpfpavstdyvyllmpvrlpg

    Sequence, based on observed residues (ATOM records):
    >6fvoA (A:)
vgltdltfrllresfadavswvaknlparpavpvlsgvlltgsdngltisgfdyevsaea
qvgaeivspgsvlvsgrllsditralpnkpvdvhvegnrvaltcgnarfslptmpvedyp
tlptlpeetgllpaelfaeaisqvaiaagrddtlpmltgirveilgetvvlaatdrfrla
vrelkwsasspdieaavlvpaktlaeaakagiggsdvrlslgtgpggkdgllgisgngkr
sttrlldaefpkfrqllptehtavatmdvaelieaiklvalvadrgaqvrmefadgsvrl
sagaddvgraeedlvvdyagepltiafnptyltdglsslrservsfgfttagksallrpv
sgddrpngngpfpavstdyvyllmpvrlp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fvoB (B:)
mdaattrvgltdltfrllresfadavswvaknlparpavpvlsgvlltgsdngltisgfd
yevsaeaqvgaeivspgsvlvsgrllsditralpnkpvdvhvegnrvaltcgnarfslpt
mpvedyptlptlpeetgllpaelfaeaisqvaiaagrddtlpmltgirveilgetvvlaa
tdrfrlavrelkwsasspdieaavlvpaktlaeaakagiggsdvrlslgtgpgvgkdgll
gisgngkrsttrlldaefpkfrqllptehtavatmdvaelieaiklvalvadrgaqvrme
fadgsvrlsagaddvgraeedlvvdyagepltiafnptyltdglsslrservsfgfttag
ksallrpvsgddrpvaglngngpfpavstdyvyllmpvrlpg

    Sequence, based on observed residues (ATOM records):
    >6fvoB (B:)
vgltdltfrllresfadavswvaknlparpavpvlsgvlltgsdngltisgfdyevsaea
qvgaeivspgsvlvsgrllsditralpnkpvdvhvegnrvaltcgnarfslptmpvedyp
tlptlpeetgllpaelfaeaisqvaiaagrddtlpmltgirveilgetvvlaatdrfrla
vrelkwsasspdieaavlvpaktlaeaakagiggsdvrlslggllgisgngkrsttrlld
aefpkfrqllptehtavatmdvaelieaiklvalvadrgaqvrmefadgsvrlsagaddv
graeedlvvdyagepltiafnptyltdglsslrservsfgfttagksallrpvsngngpf
pavstdyvyllmpvrl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6fvoC (C:)
mdaattrvgltdltfrllresfadavswvaknlparpavpvlsgvlltgsdngltisgfd
yevsaeaqvgaeivspgsvlvsgrllsditralpnkpvdvhvegnrvaltcgnarfslpt
mpvedyptlptlpeetgllpaelfaeaisqvaiaagrddtlpmltgirveilgetvvlaa
tdrfrlavrelkwsasspdieaavlvpaktlaeaakagiggsdvrlslgtgpgvgkdgll
gisgngkrsttrlldaefpkfrqllptehtavatmdvaelieaiklvalvadrgaqvrme
fadgsvrlsagaddvgraeedlvvdyagepltiafnptyltdglsslrservsfgfttag
ksallrpvsgddrpvaglngngpfpavstdyvyllmpvrlpg

    Sequence, based on observed residues (ATOM records):
    >6fvoC (C:)
vgltdltfrllresfadavswvaknlparpavpvlsgvlltgsdngltisgfdyevsaea
qvgaeivspgsvlvsgrllsditralpnkpvdvhvegnrvaltcgnarfslptmpvedyp
tlptlpeetgllpaelfaeaisqvaiaagrddtlpmltgirveilgetvvlaatdrfrla
vrelkwsasspdieaavlvpaktlaeaakagiggsdvrlslgtgpggkdgllgisgngkr
sttrlldaefpkfrqllptehtavatmdvaelieaiklvalvadrgaqvrmefadgsvrl
sagaddvgraeedlvvdyagepltiafnptyltdglsslrservsfgfttagksallrpv
sgddrpngngpfpavstdyvyllmpvrlp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6fvoD (D:)
mdaattrvgltdltfrllresfadavswvaknlparpavpvlsgvlltgsdngltisgfd
yevsaeaqvgaeivspgsvlvsgrllsditralpnkpvdvhvegnrvaltcgnarfslpt
mpvedyptlptlpeetgllpaelfaeaisqvaiaagrddtlpmltgirveilgetvvlaa
tdrfrlavrelkwsasspdieaavlvpaktlaeaakagiggsdvrlslgtgpgvgkdgll
gisgngkrsttrlldaefpkfrqllptehtavatmdvaelieaiklvalvadrgaqvrme
fadgsvrlsagaddvgraeedlvvdyagepltiafnptyltdglsslrservsfgfttag
ksallrpvsgddrpvaglngngpfpavstdyvyllmpvrlpg

    Sequence, based on observed residues (ATOM records):
    >6fvoD (D:)
vgltdltfrllresfadavswvaknlpapavpvlsgvlltgsdngltisgfdyevsaeaq
vgaeivspgsvlvsgrllsditralpnkpvdvhvegnrvaltcgnarfslptmpvedypt
lptlpeetgllpaelfaeaisqvaiaagrddtlpmltgirveilgetvvlaatdrfrlav
relkwsasspdieaavlvpaktlaeaakagiggsdvrlslgtgdgllgisgngkrsttrl
ldaefpkfrqllptehtavatmdvaelieaiklvalvadrgaqvrmefadgsvrlsagad
dvgraeedlvvdyagepltiafnptyltdglsslrservsfgfttagksallrpvsngng
pfpavstdyvyllmpvrlp

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6fvoH (H:)
qadlf

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6fvoI (I:)
qadlf

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6fvoJ (J:)
qadlf

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6fvoK (K:)
qadlf