PDB entry 6fvl

View 6fvl on RCSB PDB site
Description: dna polymerase sliding clamp from escherichia coli with bound p7 peptide
Deposited on 2018-03-04, released 2019-04-10
The last revision was dated 2020-09-16, with a file datestamp of 2020-09-11.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta sliding clamp
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: dnaN, b3701, JW3678
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A988 (2-367)
      • expression tag (0-1)
  • Chain 'B':
    Compound: Beta sliding clamp
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: dnaN, b3701, JW3678
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A988 (2-367)
      • expression tag (0-1)
  • Chain 'C':
    Compound: Beta sliding clamp
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: dnaN, b3701, JW3678
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A988 (2-367)
      • expression tag (0-1)
  • Chain 'D':
    Compound: Beta sliding clamp
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: dnaN, b3701, JW3678
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A988 (2-367)
      • expression tag (0-1)
  • Chain 'H':
    Compound: P7 peptide
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FVL (Start-4)
  • Chain 'I':
    Compound: P7 peptide
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FVL (Start-4)
  • Chain 'J':
    Compound: P7 peptide
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FVL (Start-4)
  • Chain 'K':
    Compound: P7 peptide
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FVL (Start-4)
  • Heterogens: 1PE, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6fvlA (A:)
shmkftverehllkplqqvsgplggrptlpilgnlllqvadgtlsltgtdlememvarva
lvqphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpn
lddwqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrla
vcsmpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvd
grfpdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpe
qeeaeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaa
yvvmpmrl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fvlB (B:)
shmkftverehllkplqqvsgplggrptlpilgnlllqvadgtlsltgtdlememvarva
lvqphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpn
lddwqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrla
vcsmpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvd
grfpdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpe
qeeaeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaa
yvvmpmrl

    Sequence, based on observed residues (ATOM records):
    >6fvlB (B:)
shmkftverehllkplqqvsgplgtlpilgnlllqvadgtlsltgtdlememvarvalvq
phepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpnldw
qseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrlavcsm
pigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvdgrfp
dyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpeqeea
eeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaayvvm
pmrl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6fvlC (C:)
shmkftverehllkplqqvsgplggrptlpilgnlllqvadgtlsltgtdlememvarva
lvqphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpn
lddwqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrla
vcsmpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvd
grfpdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpe
qeeaeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaa
yvvmpmrl

    Sequence, based on observed residues (ATOM records):
    >6fvlC (C:)
shmkftverehllkplqqvsgplgptlpilgnlllqvadgtlsltgtdlememvarvalv
qphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpnld
dwqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrlavc
smpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvdgr
fpdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpeqe
eaeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaayv
vmpmrl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6fvlD (D:)
shmkftverehllkplqqvsgplggrptlpilgnlllqvadgtlsltgtdlememvarva
lvqphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpn
lddwqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrla
vcsmpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvd
grfpdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpe
qeeaeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaa
yvvmpmrl

    Sequence, based on observed residues (ATOM records):
    >6fvlD (D:)
shmkftverehllkplqqvsgplgptlpilgnlllqvadgtlsltgtdlememvarvalv
qphepgattvparkffdicrglpegaeiavqlegermlvrsgrsrfslstlpaadfpnld
wqseveftlpqatmkrlieatqfsmahqdvryylngmlfetegeelrtvatdghrlavcs
mpigqslpshsvivprkgvielmrmldggdnplrvqigsnnirahvgdfiftsklvdgrf
pdyrrvlpknpdkhleagcdllkqafaraailsnekfrgvrlyvsenqlkitannpeqee
aeeildvtysgaemeigfnvsyvldvlnalkcenvrmmltdsvssvqiedaasqsaayvv
mpmrl

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6fvlH (H:)
qadlf

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6fvlI (I:)
qadlf

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6fvlJ (J:)
qadlf

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6fvlK (K:)
qadlf