PDB entry 6ftx

View 6ftx on RCSB PDB site
Description: structure of the chromatin remodelling enzyme chd1 bound to a ubiquitinylated nucleosome
Deposited on 2018-02-25, released 2018-08-08
The last revision was dated 2018-10-17, with a file datestamp of 2018-10-12.
Experiment type: EM
Resolution: 4.5 Å
R-factor: N/A
AEROSPACI score: 0.02 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histone h3
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Histone H2A type 1
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06897
      • conflict (99)
  • Chain 'D':
    Compound: histone h2b
    Species: Xenopus tropicalis [TaxId:8364]
    Gene: LOC108648866
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Histone H3.3C
    Species: Xenopus laevis [TaxId:8355]
    Gene: H3F3C
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02302 (3-109)
      • expression tag (0-2)
      • conflict (4)
      • conflict (6-12)
      • conflict (60)
  • Chain 'F':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Histone H2A type 1
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06897
      • conflict (99)
  • Chain 'H':
    Compound: histone h2b
    Species: Xenopus tropicalis [TaxId:8364]
    Gene: LOC108648866
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA (159-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'J':
    Compound: DNA (160-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'N':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: Chromatin-remodeling ATPase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: CHD1, SCKG_4184
    Database cross-references and differences (RAF-indexed):
    • PDB 6FTX (0-877)
  • Heterogens: BEF, ADP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6ftxA (A:)
    phryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqease
    aylvalfedtnlcaihakrvtimpkdiqlarrirger
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ftxB (B:)
    msgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlk
    vflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
    

    Sequence, based on observed residues (ATOM records):
    >6ftxB (B:)
    kvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrk
    tvtamdvvyalkrqgrtlygfgg
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ftxC (C:)
    msgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylt
    aeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk
    tesaksaksk
    

    Sequence, based on observed residues (ATOM records):
    >6ftxC (C:)
    trssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardnkk
    triiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ftxD (D:)
    mpdpaksapaakkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskam
    simnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavt
    kytsak
    

    Sequence, based on observed residues (ATOM records):
    >6ftxD (D:)
    ktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstit
    sreiqtavrlllpgelakhavsegtkavtkytsak
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6ftxE (E:)
    aaaaaaaaaaaaahryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfq
    ssavmalqeaseaylvalfedtnlcaihakrvtimpkdiqlarrirgera
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ftxF (F:)
    msgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlk
    vflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
    

    Sequence, based on observed residues (ATOM records):
    >6ftxF (F:)
    gkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdav
    tytehakrktvtamdvvyalkrqgrtlygfgg
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6ftxG (G:)
    msgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylt
    aeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkk
    tesaksaksk
    

    Sequence, based on observed residues (ATOM records):
    >6ftxG (G:)
    aktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardn
    kktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6ftxH (H:)
    mpdpaksapaakkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskam
    simnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavt
    kytsak
    

    Sequence, based on observed residues (ATOM records):
    >6ftxH (H:)
    trkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstits
    reiqtavrlllpgelakhavsegtkavtkytsa
    

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6ftxN (N:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >6ftxO (O:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records:
    >6ftxW (W:)
    dfhgidivinhrlktsktvpdlnnckenyeflikwtdeshlhntwetyesigqvrglkrl
    dnyckqfiiedqqvrldpyvtaedieimdmererrldefeefhvperiidsqrasledgt
    sqlqylvkwrrlnydeatwenatdivklapeqvkhfqnrenskilpqyssnytsqrprfe
    klsvqppfikggelrdfqltginwmaflwskgdngilademglgktvqtvafiswlifar
    rqngphiivvplstmpawldtfekwapdlncicymgnqksrdtireyefytnprakgkkt
    mkfnvllttyeyilkdraelgsikwqfmavdeahrlknaesslyeslnsfkvanrmlitg
    tplqnnikelaalvnflmpgrfnqdeeqeeyihdlhrriqpfilrrlkkdvekslpskte
    rilrvelsdvqteyykniltknysaltagakgghfsllnimnelkkasnhpylfdnaeer
    vlqkfmtrenvlrglimssgkmvlldqlltrlkkdghrvlifsqmvrmldilgdylsikg
    infqrldgtvpsaqrrisidhfnspdsndfvfllstragglginlmtadtvvifdsdwnp
    qadlqamarahrigqknhvmvyrlvskdtveeevlerarkkmileydmdsigesevraly
    kailkfgnlkeildeliadgtlpvksfekygetydemmeaakdcvheeeknrkeilekle
    khatayraklksgeikaenqpkdnpltrlslkkrekkavlfnfkgvkslnaesllsrved
    lkylknlinsnykddplkfslgnntpkpvqnwssnwtkeedeklligvfkygygswtqir
    ddpflgitdkiflkkvpgaihlgrrvdyllsflrggln