PDB entry 6ftl

View 6ftl on RCSB PDB site
Description: Rubisco from Skeletonema marinoi
Class: lyase
Keywords: photosynthesis, carbon dioxide fixation, diatom, lyase
Deposited on 2018-02-22, released 2018-06-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-04-24, with a file datestamp of 2019-04-19.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Skeletonema marinoi [TaxId:267567]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FTL (Start-483)
    Domains in SCOPe 2.08: d6ftla1, d6ftla2
  • Chain 'C':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Skeletonema marinoi [TaxId:267567]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FTL (Start-483)
    Domains in SCOPe 2.08: d6ftlc1, d6ftlc2
  • Chain 'E':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Skeletonema marinoi [TaxId:267567]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FTL (Start-483)
    Domains in SCOPe 2.08: d6ftle1, d6ftle2
  • Chain 'G':
    Compound: ribulose bisphosphate carboxylase large chain
    Species: Skeletonema marinoi [TaxId:267567]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FTL (Start-483)
    Domains in SCOPe 2.08: d6ftlg1, d6ftlg2
  • Chain 'I':
    Compound: ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
    Species: Skeletonema marinoi [TaxId:267567]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FTL (0-138)
    Domains in SCOPe 2.08: d6ftli_
  • Chain 'J':
    Compound: ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
    Species: Skeletonema marinoi [TaxId:267567]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FTL (0-138)
    Domains in SCOPe 2.08: d6ftlj_
  • Chain 'K':
    Compound: ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
    Species: Skeletonema marinoi [TaxId:267567]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FTL (0-138)
    Domains in SCOPe 2.08: d6ftlk_
  • Chain 'L':
    Compound: ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
    Species: Skeletonema marinoi [TaxId:267567]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FTL (0-138)
    Domains in SCOPe 2.08: d6ftll_
  • Heterogens: MG, CAP, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ftlA (A:)
msqsvsertriksdryesgvipyakmgywdasytvkdtdvlalfritpqpgvdpveaaaa
vagesstatwtvvwtdlltaceryrakayrvdpvpnsadvffafiayecdlfeeaslanl
tasiignvfgfkavsalrledmriphsylxtfqgpatgiivererlnkygtpllgatvkp
klglsgknygrvvyeglxggldflkddeninsqpfmrwrerflncmeginrasaatgevk
gsylnitaatmeevykraeyakavgsivvmidlvmgytaiqsiaywarendmllhlhrag
nstyarqknhginfrvickwmrmsgvdhihagtvvgklegdplmikgfydilrltelevn
lpfgiffemdwaslrrcmpvasggihcgqmhqlihylgddvvlqfgggtighpdgiqaga
tanrvalesmvlarnegvdyfdqqvgpqilrdaaktcgplqtaldlwkdisfdytstdta
dfae

    Sequence, based on observed residues (ATOM records): (download) 
    >6ftlA (A:)
qsvsertriksdryesgvipyakmgywdasytvkdtdvlalfritpqpgvdpveaaaava
gesstatwtvvwtdlltaceryrakayrvdpvpnsadvffafiayecdlfeeaslanlta
siignvfgfkavsalrledmriphsylxtfqgpatgiivererlnkygtpllgatvkpkl
glsgknygrvvyeglxggldflkddeninsqpfmrwrerflncmeginrasaatgevkgs
ylnitaatmeevykraeyakavgsivvmidlvmgytaiqsiaywarendmllhlhragns
tyarqknhginfrvickwmrmsgvdhihagtvvgklegdplmikgfydilrltelevnlp
fgiffemdwaslrrcmpvasggihcgqmhqlihylgddvvlqfgggtighpdgiqagata
nrvalesmvlarnegvdyfdqqvgpqilrdaaktcgplqtaldlwkdisfdytstdtadf
ae

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ftlC (C:)
msqsvsertriksdryesgvipyakmgywdasytvkdtdvlalfritpqpgvdpveaaaa
vagesstatwtvvwtdlltaceryrakayrvdpvpnsadvffafiayecdlfeeaslanl
tasiignvfgfkavsalrledmriphsylxtfqgpatgiivererlnkygtpllgatvkp
klglsgknygrvvyeglxggldflkddeninsqpfmrwrerflncmeginrasaatgevk
gsylnitaatmeevykraeyakavgsivvmidlvmgytaiqsiaywarendmllhlhrag
nstyarqknhginfrvickwmrmsgvdhihagtvvgklegdplmikgfydilrltelevn
lpfgiffemdwaslrrcmpvasggihcgqmhqlihylgddvvlqfgggtighpdgiqaga
tanrvalesmvlarnegvdyfdqqvgpqilrdaaktcgplqtaldlwkdisfdytstdta
dfae

    Sequence, based on observed residues (ATOM records): (download) 
    >6ftlC (C:)
qsvsertriksdryesgvipyakmgywdasytvkdtdvlalfritpqpgvdpveaaaava
gesstatwtvvwtdlltaceryrakayrvdpvpnsadvffafiayecdlfeeaslanlta
siignvfgfkavsalrledmriphsylxtfqgpatgiivererlnkygtpllgatvkpkl
glsgknygrvvyeglxggldflkddeninsqpfmrwrerflncmeginrasaatgevkgs
ylnitaatmeevykraeyakavgsivvmidlvmgytaiqsiaywarendmllhlhragns
tyarqknhginfrvickwmrmsgvdhihagtvvgklegdplmikgfydilrltelevnlp
fgiffemdwaslrrcmpvasggihcgqmhqlihylgddvvlqfgggtighpdgiqagata
nrvalesmvlarnegvdyfdqqvgpqilrdaaktcgplqtaldlwkdisfdytstdtadf
ae

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6ftlE (E:)
msqsvsertriksdryesgvipyakmgywdasytvkdtdvlalfritpqpgvdpveaaaa
vagesstatwtvvwtdlltaceryrakayrvdpvpnsadvffafiayecdlfeeaslanl
tasiignvfgfkavsalrledmriphsylxtfqgpatgiivererlnkygtpllgatvkp
klglsgknygrvvyeglxggldflkddeninsqpfmrwrerflncmeginrasaatgevk
gsylnitaatmeevykraeyakavgsivvmidlvmgytaiqsiaywarendmllhlhrag
nstyarqknhginfrvickwmrmsgvdhihagtvvgklegdplmikgfydilrltelevn
lpfgiffemdwaslrrcmpvasggihcgqmhqlihylgddvvlqfgggtighpdgiqaga
tanrvalesmvlarnegvdyfdqqvgpqilrdaaktcgplqtaldlwkdisfdytstdta
dfae

    Sequence, based on observed residues (ATOM records): (download) 
    >6ftlE (E:)
qsvsertriksdryesgvipyakmgywdasytvkdtdvlalfritpqpgvdpveaaaava
gesstatwtvvwtdlltaceryrakayrvdpvpnsadvffafiayecdlfeeaslanlta
siignvfgfkavsalrledmriphsylxtfqgpatgiivererlnkygtpllgatvkpkl
glsgknygrvvyeglxggldflkddeninsqpfmrwrerflncmeginrasaatgevkgs
ylnitaatmeevykraeyakavgsivvmidlvmgytaiqsiaywarendmllhlhragns
tyarqknhginfrvickwmrmsgvdhihagtvvgklegdplmikgfydilrltelevnlp
fgiffemdwaslrrcmpvasggihcgqmhqlihylgddvvlqfgggtighpdgiqagata
nrvalesmvlarnegvdyfdqqvgpqilrdaaktcgplqtaldlwkdisfdytstdtadf
ae

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6ftlG (G:)
msqsvsertriksdryesgvipyakmgywdasytvkdtdvlalfritpqpgvdpveaaaa
vagesstatwtvvwtdlltaceryrakayrvdpvpnsadvffafiayecdlfeeaslanl
tasiignvfgfkavsalrledmriphsylxtfqgpatgiivererlnkygtpllgatvkp
klglsgknygrvvyeglxggldflkddeninsqpfmrwrerflncmeginrasaatgevk
gsylnitaatmeevykraeyakavgsivvmidlvmgytaiqsiaywarendmllhlhrag
nstyarqknhginfrvickwmrmsgvdhihagtvvgklegdplmikgfydilrltelevn
lpfgiffemdwaslrrcmpvasggihcgqmhqlihylgddvvlqfgggtighpdgiqaga
tanrvalesmvlarnegvdyfdqqvgpqilrdaaktcgplqtaldlwkdisfdytstdta
dfae

    Sequence, based on observed residues (ATOM records): (download) 
    >6ftlG (G:)
qsvsertriksdryesgvipyakmgywdasytvkdtdvlalfritpqpgvdpveaaaava
gesstatwtvvwtdlltaceryrakayrvdpvpnsadvffafiayecdlfeeaslanlta
siignvfgfkavsalrledmriphsylxtfqgpatgiivererlnkygtpllgatvkpkl
glsgknygrvvyeglxggldflkddeninsqpfmrwrerflncmeginrasaatgevkgs
ylnitaatmeevykraeyakavgsivvmidlvmgytaiqsiaywarendmllhlhragns
tyarqknhginfrvickwmrmsgvdhihagtvvgklegdplmikgfydilrltelevnlp
fgiffemdwaslrrcmpvasggihcgqmhqlihylgddvvlqfgggtighpdgiqagata
nrvalesmvlarnegvdyfdqqvgpqilrdaaktcgplqtaldlwkdisfdytstdtadf
ae

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ftlI (I:)
mrltqgcfsflpdltdaqiekqvayamakgwamnvewtddphprnnywelwglplfdikd
patvmfelnearkscaagyirinafdasygvescvmsfitnrptnepgfyldrtdgpgrq
ivysiksysvqanpegsry

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ftlJ (J:)
mrltqgcfsflpdltdaqiekqvayamakgwamnvewtddphprnnywelwglplfdikd
patvmfelnearkscaagyirinafdasygvescvmsfitnrptnepgfyldrtdgpgrq
ivysiksysvqanpegsry

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ftlK (K:)
mrltqgcfsflpdltdaqiekqvayamakgwamnvewtddphprnnywelwglplfdikd
patvmfelnearkscaagyirinafdasygvescvmsfitnrptnepgfyldrtdgpgrq
ivysiksysvqanpegsry

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ftlL (L:)
mrltqgcfsflpdltdaqiekqvayamakgwamnvewtddphprnnywelwglplfdikd
patvmfelnearkscaagyirinafdasygvescvmsfitnrptnepgfyldrtdgpgrq
ivysiksysvqanpegsry