PDB entry 6fqm

View 6fqm on RCSB PDB site
Description: 3.06a complex of s.aureus gyrase with imidazopyrazinone t1 and dna
Deposited on 2018-02-14, released 2018-04-04
The last revision was dated 2018-05-16, with a file datestamp of 2018-05-11.
Experiment type: XRAY
Resolution: 3.06 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA gyrase subunit A
    Species: Staphylococcus aureus subsp. aureus N315 [TaxId:158879]
    Gene: gyrA, SA0006
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA gyrase subunit b
    Species: Staphylococcus aureus subsp. aureus N315 [TaxId:158879]
    Gene: gyrB, SA0005
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA gyrase subunit A
    Species: Staphylococcus aureus subsp. aureus N315 [TaxId:158879]
    Gene: gyrA, SA0006
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA gyrase subunit b
    Species: Staphylococcus aureus subsp. aureus N315 [TaxId:158879]
    Gene: gyrB, SA0005
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (5'-d(*gp*ap*gp*ap*gp*tp*ap*t*gp*gp*cp*cp*ap*tp*ap*cp*tp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-d(*gp*ap*gp*ap*gp*tp*ap*t*gp*gp*cp*cp*ap*tp*ap*cp*tp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'a':
    Compound: DNA gyrase subunit A
    Species: Staphylococcus aureus subsp. aureus N315 [TaxId:158879]
    Gene: gyrA, SA0006
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: DNA gyrase subunit b
    Species: Staphylococcus aureus subsp. aureus N315 [TaxId:158879]
    Gene: gyrB, SA0005
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: DNA gyrase subunit A
    Species: Staphylococcus aureus subsp. aureus N315 [TaxId:158879]
    Gene: gyrA, SA0006
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: DNA gyrase subunit b
    Species: Staphylococcus aureus subsp. aureus N315 [TaxId:158879]
    Gene: gyrB, SA0005
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: DNA (5'-d(*gp*ap*gp*ap*gp*tp*ap*t*gp*gp*cp*cp*ap*tp*ap*cp*tp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'f':
    Compound: DNA (5'-d(*gp*ap*gp*ap*gp*tp*ap*t*gp*gp*cp*cp*ap*tp*ap*cp*tp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: E32, MN, SO4, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fqmA (A:)
aelpqsrinernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmtpd
ksykksarivgdvmgkyhphgdssiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaam
rytearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgiavgmat
nipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsi
qmrsravieergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtg
vrvvidvrkdanasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqkt
vvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekq
aqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfg
ddrrteiqlg

    Sequence, based on observed residues (ATOM records):
    >6fqmA (A:)
inernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmtpdksykksa
rivgdvmgkyhphgdssiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaamrytearm
tkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgiavgmatnipphnl
telingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsiqmrsrav
ieergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtgvrvvidv
rkdanasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqktvvrrrtq
ynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekqaqaildm
rlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfgddrrtei
ql

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fqmB (B:)
dvaslpgkladcsskspeeceiflvegdsaggstksgrdsrtqailplrgkilnvekarl
drilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfmr
plieagyvyiaqpptgykglgemnadqlwettmnpehrallqvkledaieadqtfemlmg
dvvenrrqfiednavyanldf

    Sequence, based on observed residues (ATOM records):
    >6fqmB (B:)
dcskspeeceiflvegdsgrrtqailplrgkilnvekarldrilnnneirqmitafgtgi
ggdfdlakaryhkivimtdadvdgahirtllltffyrfmrplieagyvyiaqpttmnpea
llqvkledaieadqtfemlmgdvvenrrqfiednav

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6fqmC (C:)
aelpqsrinernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmtpd
ksykksarivgdvmgkyhphgdssiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaam
rytearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgiavgmat
nipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsi
qmrsravieergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtg
vrvvidvrkdanasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqkt
vvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekq
aqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfg
ddrrteiqlg

    Sequence, based on observed residues (ATOM records):
    >6fqmC (C:)
nernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmtpdksykksar
ivgdvmgkyhphgdssiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaamrytearmt
kitlellrdinkdtidfidnydgnerepsvlparfpnllangasgiavgmatnipphnlt
elingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsiqmrsravi
eergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtgvrvvidvr
kdanasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqktvvrrrtqy
nlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekqaqaildmr
lrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfgddrrteiq
l

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6fqmD (D:)
mdvaslpgkladcsskspeeceiflvegdsaggstksgrdsrtqailplrgkilnvekar
ldrilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfm
rplieagyvyiaqpptgykglgemnadqlwettmnpehrallqvkledaieadqtfemlm
gdvvenrrqfiednavyanldf

    Sequence, based on observed residues (ATOM records):
    >6fqmD (D:)
speceiflvegddsrtqailplrgkilnvekarldrilnnneirqmitafgtgiggdfdl
akaryhkivimtdadvdgahirtllltffyrfmrplieagyvyiaqpllwettrallqvk
ledaieadqtfemlmgdvvenrrqfiedna

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6fqma (a:)
aelpqsrinernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmtpd
ksykksarivgdvmgkyhphgdssiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaam
rytearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgiavgmat
nipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsi
qmrsravieergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtg
vrvvidvrkdanasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqkt
vvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekq
aqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfg
ddrrteiqlg

    Sequence, based on observed residues (ATOM records):
    >6fqma (a:)
nernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmtpdksykksar
ivgdvmgkyhphgdssiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaamrytearmt
kitlellrdinkdtidfidnydgnerepsvlparfpnllangasgiavgmatnipphnlt
elingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsiqmrsravi
eqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtgvrvvidvrkanasv
ilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqktvvrrrtqynlrkakd
rahileglrialdhideiistiresdtdkvameslqqrfklsekqaqaildmrlrrltgl
erdkieaeynellnyiseletiladeevllqlvrdelteirdrfgddrrteiql

  • Chain 'b':
    Sequence, based on SEQRES records:
    >6fqmb (b:)
dvaslpgkladcsskspeeceiflvegdsaggstksgrdsrtqailplrgkilnvekarl
drilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfmr
plieagyvyiaqpptgykglgemnadqlwettmnpehrallqvkledaieadqtfemlmg
dvvenrrqfiednavyanldf

    Sequence, based on observed residues (ATOM records):
    >6fqmb (b:)
ladcsskspeeceiflvegddsrtqailplrgkilnvekarldrilnnneirqmitafgt
giggdfdlakaryhkivimtdadvdgahirtllltffyrfmrplieagyvyiaqpwettn
prallqvkledaieadqtfemlmgdvvenrrqfiednavy

  • Chain 'c':
    Sequence, based on SEQRES records:
    >6fqmc (c:)
aelpqsrinernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmtpd
ksykksarivgdvmgkyhphgdssiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaam
rytearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgiavgmat
nipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsi
qmrsravieergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtg
vrvvidvrkdanasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqkt
vvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekq
aqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfg
ddrrteiqlg

    Sequence, based on observed residues (ATOM records):
    >6fqmc (c:)
nernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmtpdksykksar
ivgdvmgkyhphgdssiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaamrytearmt
kitlellrdinkdtidfidnydgnerepsvlparfpnllangasgiavgmatnipphnlt
elingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsiqmrsravi
eergggqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtgvrvvidvrk
danasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqktvvrrrtqyn
lrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekqaqaildmrl
rrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfgddrrteiql

  • Chain 'd':
    Sequence, based on SEQRES records:
    >6fqmd (d:)
dvaslpgkladcsskspeeceiflvegdsaggstksgrdsrtqailplrgkilnvekarl
drilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfmr
plieagyvyiaqpptgykglgemnadqlwettmnpehrallqvkledaieadqtfemlmg
dvvenrrqfiednavyanldf

    Sequence, based on observed residues (ATOM records):
    >6fqmd (d:)
adcskspeeceiflvegdsdsrtqailplrgkilnvekarldrilnnneirqmitafgtg
iggdfdlakaryhkivimtdadvdgahirtllltffyrfmrplieagyvyiaqllqvkle
daieadqtfemlmgdvvenrrqfiednavy

  • Chain 'e':
    No sequence available.

  • Chain 'f':
    No sequence available.