PDB entry 6fqc

View 6fqc on RCSB PDB site
Description: crystal structure of fe(ii)- and 2og-dependent oxygenase jmjd6 (aa 1- 403) in complex with mn(ii) and nog
Deposited on 2018-02-13, released 2018-05-09
Made obsolete on 2019-08-28

The last revision was dated 2021-06-23, with a file datestamp of 2021-06-18.
Experiment type: XRAY
Resolution: 1.67 Å
R-factor: N/A
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
    Species: Homo sapiens [TaxId:9606]
    Gene: JMJD6, KIAA0585, PTDSR
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
    Species: Homo sapiens [TaxId:9606]
    Gene: JMJD6, KIAA0585, PTDSR
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: ala-ala-ala-ser-ala-ala-ala
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FQC (0-6)
  • Chain 'E':
    Compound: ala-ala-ala-ala-ala-ala
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FQC (0-6)
  • Heterogens: MN, PO4, CL, OGA, ACT, NA, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fqcA (A:)
mnhkskkrireakrsarpelkdsldwtrhnyyesfslspaavadnveradalqlsveefv
eryerpykpvvllnaqegwsaqekwtlerlkrkyrnqkfkcgedndgysvkmkmkyyiey
mestrddsplyifdssygehpkrrklledykvpkfftddlfqyagekrrppyrwfvmgpp
rsgtgihidplgtsawnalvqghkrwclfptstprelikvtrdeggnqqdeaitwfnviy
prtqlptwppefkpleilqkpgetvfvpggwwhvvlnldttiaitqnfasstnfpvvwhk
tvrgrpklsrkwyrilkqehpelavladsvdlqestgiasdsssdssssssssssdsdse
cesgsegdgtvhrrkkrrtcsmvgngdttsqddcvskersssr

    Sequence, based on observed residues (ATOM records):
    >6fqcA (A:)
mnhkskkrireakrsarpelkdsldwtrhnyyesfslspaavadnveradalqlsveefv
eryerpykpvvllnaqegwsaqekwtlerlkrkyrnqkfkcgedndgysvkmkmkyyiey
mestrddsplyifdssygehpkrrklledykvpkfftddlfqyagekrrppyrwfvmgpp
rsgtgihidplgtsawnalvqghkrwclfptstprelikvtrdeggnqqdeaitwfnviy
prtqlptwppefkpleilqkpgetvfvpggwwhvvlnldttiaitqnfasstnfpvvwhk
tvrgrpklsrkwyrilkqehpelavladsvdlqe

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fqcB (B:)
mnhkskkrireakrsarpelkdsldwtrhnyyesfslspaavadnveradalqlsveefv
eryerpykpvvllnaqegwsaqekwtlerlkrkyrnqkfkcgedndgysvkmkmkyyiey
mestrddsplyifdssygehpkrrklledykvpkfftddlfqyagekrrppyrwfvmgpp
rsgtgihidplgtsawnalvqghkrwclfptstprelikvtrdeggnqqdeaitwfnviy
prtqlptwppefkpleilqkpgetvfvpggwwhvvlnldttiaitqnfasstnfpvvwhk
tvrgrpklsrkwyrilkqehpelavladsvdlqestgiasdsssdssssssssssdsdse
cesgsegdgtvhrrkkrrtcsmvgngdttsqddcvskersssr

    Sequence, based on observed residues (ATOM records):
    >6fqcB (B:)
nhkskkrireakrsarpelkdsldwtrhnyyesfslspaavadnveradalqlsveefve
ryerpykpvvllnaqegwsaqekwtlerlkrkyrnqkfkcgedndgysvkmkmkyyieym
estrddsplyifdssygehpkrrklledykvpkfftddlfqyagekrrppyrwfvmgppr
sgtgihidplgtsawnalvqghkrwclfptstprelikvtrdeggnqqdeaitwfnviyp
rtqlptwppefkpleilqkpgetvfvpggwwhvvlnldttiaitqnfasstnfpvvwhkt
vrgrpklsrkwyrilkqehpelavladsvdlqe

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6fqcD (D:)
aaasaaa

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6fqcE (E:)
aaaaaaa