PDB entry 6fq8

View 6fq8 on RCSB PDB site
Description: class 3 : translocated nucleosome
Deposited on 2018-02-13, released 2018-04-18
The last revision was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: EM
Resolution: 4.8 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Histone H3.3C
    Species: Xenopus laevis [TaxId:8355]
    Gene: H3F3C
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02302
      • conflict (49)
  • Chain 'B':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Gene: hist1h2aj, LOC494591
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: histone h2b
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18032686mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Histone H3.3C
    Species: Xenopus laevis [TaxId:8355]
    Gene: H3F3C
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02302
      • conflict (49)
  • Chain 'F':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Gene: hist1h2aj, LOC494591
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: histone h2b
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18032686mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA (147-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'J':
    Compound: DNA (147-mer)
    Species: synthetic construct, synthetic [TaxId:32630]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fq8A (A:)
kphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeas
eaylvalfedtnlcaihakrvtimpkdiqlarrirger

    Sequence, based on observed residues (ATOM records):
    >6fq8A (A:)
phryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqease
aylvalfedtnlcaihakrvtimpkdiqlarrirg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fq8B (B:)
rhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyteha
krktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records):
    >6fq8B (B:)
rhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyteha
krktvtamdvvyalkrqgrtlygf

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6fq8C (C:)
ktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagn
aardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk

    Sequence, based on observed residues (ATOM records):
    >6fq8C (C:)
kaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaard
nkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6fq8D (D:)
rktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrsti
tsreiqtavrlllpgelakhavsegtkavtkytsa

    Sequence, based on observed residues (ATOM records):
    >6fq8D (D:)
syaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiq
tavrlllpgelakhavsegtkavtkytsa

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6fq8E (E:)
kphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeas
eaylvalfedtnlcaihakrvtimpkdiqlarrirger

    Sequence, based on observed residues (ATOM records):
    >6fq8E (E:)
ryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseay
lvalfedtnlcaihakrvtimpkdiqlarrirg

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6fq8F (F:)
rhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyteha
krktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records):
    >6fq8F (F:)
kvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrk
tvtamdvvyalkrqgrtlygfgg

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6fq8G (G:)
ktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagn
aardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk

    Sequence, based on observed residues (ATOM records):
    >6fq8G (G:)
akaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaar
dnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllp

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6fq8H (H:)
rktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrsti
tsreiqtavrlllpgelakhavsegtkavtkytsa

    Sequence, based on observed residues (ATOM records):
    >6fq8H (H:)
syaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsreiq
tavrlllpgelakhavsegtkavtkytsa

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.