PDB entry 6fq5

View 6fq5 on RCSB PDB site
Description: class 1 : canonical nucleosome
Deposited on 2018-02-13, released 2018-04-18
The last revision was dated 2019-10-23, with a file datestamp of 2019-10-18.
Experiment type: EM
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histone h3
    Species: XENOPUS LAEVIS [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FQ5 (0-97)
  • Chain 'B':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Gene: hist1h2aj, LOC494591
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: histone h2b
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18032686mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: histone h3
    Species: XENOPUS LAEVIS [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FQ5 (Start-97)
  • Chain 'F':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Gene: hist1h2aj, LOC494591
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: histone h2b
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18032686mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA (147-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'J':
    Compound: DNA (147-mer)
    Species: synthetic construct, synthetic [TaxId:32630]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6fq5A (A:)
kphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeas
eaylvalfedtnlcaihakrvtimpkdiqlarrirger

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6fq5B (B:)
hrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehak
rktvtamdvvyalkrqgrtlygfg

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6fq5C (C:)
ktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagn
aardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6fq5D (D:)
rktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrsti
tsreiqtavrlllpgelakhavsegtkavtkytsa

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6fq5E (E:)
kphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeas
eaylvalfedtnlcaihakrvtimpkdiqlarrirger

    Sequence, based on observed residues (ATOM records):
    >6fq5E (E:)
phryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqease
aylvalfedtnlcaihakrvtimpkdiqlarrirger

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6fq5F (F:)
hrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehak
rktvtamdvvyalkrqgrtlygfgg

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6fq5G (G:)
ktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagn
aardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6fq5H (H:)
rktrkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrsti
tsreiqtavrlllpgelakhavsegtkavtkytsa

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.