PDB entry 6fq3

View 6fq3 on RCSB PDB site
Description: crystal structure of danio rerio lin41 filamin-nhl domains in complex with lin-29a 5'utr 13mer rna
Deposited on 2018-02-13, released 2018-05-09
The last revision was dated 2018-05-09, with a file datestamp of 2018-05-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: E3 ubiquitin-protein ligase TRIM71
    Species: Danio rerio [TaxId:7955]
    Gene: trim71, lin41
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RNA (5'-r(*gp*gp*ap*gp*up*cp*cp*ap*ap*cp*up*cp*c)-3')
    Species: Caenorhabditis elegans [TaxId:6239]
  • Heterogens: CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fq3A (A:)
mahhhhhhssglevlfqgpssgafataskahgegikralqgkpasftvvgydhdgeprls
ggdsvsvvlmspdgnlssaevsdhqdgtytvsylpkgegehllsvlicnqhiegspfkvm
vksgrsyggvglpmasfggegdgdgqlcrpwgicvdkegyvvvadrsnnrvqifkpcgtf
hhkfgtlgsrpgqfdrpagvacdsqrriivadkdnhriqiftfdgqfllkfgekgtkngq
fnypwdvavnfegkilvsdtrnhrvqlfgpdgtflnkygfegalwkhfdsprgvafnqeg
hlvvtdfnnhrllvirpdcqsarflgsegtgngqflrpqgvavdqedriivadsrnhriq
vfepngnflckfgthgngfgqmdrpsgiavtpdgvivavdfgnnrilmf

    Sequence, based on observed residues (ATOM records):
    >6fq3A (A:)
ssgafataskahgegikralqgkpasftvvgydhdgeprlsggdsvsvvlmspdgnlssa
evsdhqdgtytvsylpkgegehllsvlicnqhiegspfkvmvksgrsyggvglpmasfgg
egdgdgqlcrpwgicvdkegyvvvadrsnnrvqifkpcgtfhhkfgtlgsrpgqfdrpag
vacdsqrriivadkdnhriqiftfdgqfllkfgekgtkngqfnypwdvavnfegkilvsd
trnhrvqlfgpdgtflnkygfegalwkhfdsprgvafnqeghlvvtdfnnhrllvirpdc
qsarflgsegtgngqflrpqgvavdqedriivadsrnhriqvfepngnflckfgthgngf
gqmdrpsgiavtpdgvivavdfgnnrilmf

  • Chain 'B':
    No sequence available.