PDB entry 6fpx

View 6fpx on RCSB PDB site
Description: structure of s. pombe mmi1 in complex with 11-mer rna
Deposited on 2018-02-12, released 2018-05-09
The last revision was dated 2018-06-27, with a file datestamp of 2018-06-22.
Experiment type: XRAY
Resolution: 1.97 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: YTH domain-containing protein mmi1
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: mmi1, SPCC736.12c
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RNA (5'-r(p*up*up*up*ap*ap*ap*cp*cp*up*a)-3')
    Species: SCHIZOSACCHAROMYCES POMBE, synthetic [TaxId:4896]
  • Chain 'C':
    Compound: YTH domain-containing protein mmi1
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: mmi1, SPCC736.12c
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: RNA (5'-r(p*up*up*up*ap*ap*ap*cp*cp*up*a)-3')
    Species: SCHIZOSACCHAROMYCES POMBE, synthetic [TaxId:4896]
  • Chain 'E':
    Compound: YTH domain-containing protein mmi1
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: mmi1, SPCC736.12c
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: RNA (5'-r(p*up*up*up*ap*ap*ap*cp*cp*up*a)-3')
    Species: SCHIZOSACCHAROMYCES POMBE, synthetic [TaxId:4896]
  • Heterogens: GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fpxA (A:)
gpsasrkekpkarastppplnfsrasehrnekgerisminprvvldengishrsryfiml
cdnetaiahakktsiwavkkdsskrisdaykkasvyfifvaqqtynalgyaqvvsdlnst
elpfwsdsshaggvrikwiktcnlfsaeiseivshmdhgseardgmemmydegsrlctli
nyaimkrigrdr

    Sequence, based on observed residues (ATOM records):
    >6fpxA (A:)
tppplnfsrasehrnekgerisminprvvldengishrsryfimlcdnetaiahakktsi
wavkkdsskrisdaykkasvyfifvaqqtynalgyaqvvsdlnstelpfwsdsshaggvr
ikwiktcnlfsaeiseivshmdhgseardgmemmydegsrlctlinyaimkrigrdr

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6fpxC (C:)
gpsasrkekpkarastppplnfsrasehrnekgerisminprvvldengishrsryfiml
cdnetaiahakktsiwavkkdsskrisdaykkasvyfifvaqqtynalgyaqvvsdlnst
elpfwsdsshaggvrikwiktcnlfsaeiseivshmdhgseardgmemmydegsrlctli
nyaimkrigrdr

    Sequence, based on observed residues (ATOM records):
    >6fpxC (C:)
ppplnfsrasehrnekgerisminprvvldengishrsryfimlcdnetaiahakktsiw
avkkdsskrisdaykkasvyfifvaqqtynalgyaqvvsdlnstelpfwsdsshaggvri
kwiktcnlfsaeiseivshmdhgseardgmemmydegsrlctlinyaimkrigrdr

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6fpxE (E:)
gpsasrkekpkarastppplnfsrasehrnekgerisminprvvldengishrsryfiml
cdnetaiahakktsiwavkkdsskrisdaykkasvyfifvaqqtynalgyaqvvsdlnst
elpfwsdsshaggvrikwiktcnlfsaeiseivshmdhgseardgmemmydegsrlctli
nyaimkrigrdr

    Sequence, based on observed residues (ATOM records):
    >6fpxE (E:)
pplnfsrasehrnekgerisminprvvldengishrsryfimlcdnetaiahakktsiwa
vkkdsskrisdaykkasvyfifvaqqtynalgyaqvvsdlnstelpfwsdsshaggvrik
wiktcnlfsaeiseivshmdhgseardgmemmydegsrlctlinyaimkrigrdr

  • Chain 'F':
    No sequence available.