PDB entry 6fo1

View 6fo1 on RCSB PDB site
Description: human r2tp subcomplex containing 1 ruvbl1-ruvbl2 hexamer bound to 1 rbd domain from rpap3.
Deposited on 2018-02-05, released 2018-04-04
The last revision was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: EM
Resolution: 3.57 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ruvb-like 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL1, INO80H, NMP238, TIP49, TIP49A
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: ruvb-like 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL1, INO80H, NMP238, TIP49, TIP49A
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: ruvb-like 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL1, INO80H, NMP238, TIP49, TIP49A
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: RuvB-like 2
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL2, INO80J, TIP48, TIP49B, CGI-46
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: RuvB-like 2
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL2, INO80J, TIP48, TIP49B, CGI-46
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: RuvB-like 2
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL2, INO80J, TIP48, TIP49B, CGI-46
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: RNA polymerase II-associated protein 3
    Species: Homo sapiens [TaxId:9606]
    Gene: RPAP3
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ADP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fo1A (A:)
mkieevksttktqriashshvkglgldesglakqaasglvgqenareacgvivelikskk
magravllagppgtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrrai
glriketkevyegevteltpcetenpmggygktishviiglktakgtkqlkldpsifesl
qkerveagdviyieansgavkrqgrcdtyatefdleaeeyvplpkgdvhkkkeiiqdvtl
hdldvanarpqggqdilsmmgqlmkpkkteitdklrgeinkvvnkyidqgiaelvpgvlf
vdevhmldiecftylhralessiapivifasnrgncvirgteditsphgipldlldrvmi
irtmlytpqemkqiikiraqteginiseealnhlgeigtkttlrysvqlltpanllakin
gkdsiekehveeiselfydakssakiladqqdkymk

    Sequence, based on observed residues (ATOM records):
    >6fo1A (A:)
evksttktqriashshvkglgldesglakqaasglvgqenareacgvivelikskkmagr
avllagppgtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrraiglri
iqdvtlhdldvanarteitdklrgeinkvvnkyidqgiaelvpgvlfvdevhmldiecft
ylhralessiapivifasnrgncvirgteditsphgipldlldrvmiirtmlytpqemkq
iikiraqteginiseealnhlgeigtkttlrysvqlltpanllakingkdsiekehveei
selfydakssakiladqqdkymk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fo1B (B:)
mkieevksttktqriashshvkglgldesglakqaasglvgqenareacgvivelikskk
magravllagppgtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrrai
glriketkevyegevteltpcetenpmggygktishviiglktakgtkqlkldpsifesl
qkerveagdviyieansgavkrqgrcdtyatefdleaeeyvplpkgdvhkkkeiiqdvtl
hdldvanarpqggqdilsmmgqlmkpkkteitdklrgeinkvvnkyidqgiaelvpgvlf
vdevhmldiecftylhralessiapivifasnrgncvirgteditsphgipldlldrvmi
irtmlytpqemkqiikiraqteginiseealnhlgeigtkttlrysvqlltpanllakin
gkdsiekehveeiselfydakssakiladqqdkymk

    Sequence, based on observed residues (ATOM records):
    >6fo1B (B:)
evksttktqriashshvkglgldesglakqaasglvgqenareacgvivelikskkmagr
avllagppgtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrraiglrv
tlhdldvanaritdklrgeinkvvnkyidqgiaelvpgvlfvdevhmldiecftylhral
essiapivifasnrgncvirgteditsphgipldlldrvmiirtmlytpqemkqiikira
qteginiseealnhlgeigtkttlrysvqlltpanllakingkdsiekehveeiselfyd
akssakiladqqd

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6fo1C (C:)
mkieevksttktqriashshvkglgldesglakqaasglvgqenareacgvivelikskk
magravllagppgtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrrai
glriketkevyegevteltpcetenpmggygktishviiglktakgtkqlkldpsifesl
qkerveagdviyieansgavkrqgrcdtyatefdleaeeyvplpkgdvhkkkeiiqdvtl
hdldvanarpqggqdilsmmgqlmkpkkteitdklrgeinkvvnkyidqgiaelvpgvlf
vdevhmldiecftylhralessiapivifasnrgncvirgteditsphgipldlldrvmi
irtmlytpqemkqiikiraqteginiseealnhlgeigtkttlrysvqlltpanllakin
gkdsiekehveeiselfydakssakiladqqdkymk

    Sequence, based on observed residues (ATOM records):
    >6fo1C (C:)
evksttktqriashshvkglgldesglakqaasglvgqenareacgvivelikskkmagr
avllagppgtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrraiglri
iiqdvtlhdldvanateitdklrgeinkvvnkyidqgiaelvpgvlfvdevhmldiecft
ylhralessiapivifasnrgncvirgteditsphgipldlldrvmiirtmlytpqemkq
iikiraqteginiseealnhlgeigtkttlrysvqlltpanllakingkdsiekehveei
selfydakssakiladqqd

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6fo1D (D:)
matvtattkvpeirdvtrierigahshirglglddaleprqasqgmvgqlaarraagvvl
emiregkiagravliagqpgtgktaiamgmaqalgpdtpftaiagseifslemsktealt
qafrrsigvrikeeteiiegevveiqidrpatgtgskvgkltlkttemetiydlgtkmie
sltkdkvqagdvitidkatgkisklgrsftrardydamgsqtkfvqcpdgelqkrkevvh
tvslheidvinsrtqgflalfsgdtgeiksevreqinakvaewreegkaeiipgvlfide
vhmldiesfsflnralesdmapvlimatnrgitrirgtsyqsphgipidlldrllivstt
pysekdtkqilrirceeedvemsedaytvltrigletslryaiqlitaaslvcrkrkgte
vqvddikrvyslfldesrstqymkeyqdaflfnelkgetmdts

    Sequence, based on observed residues (ATOM records):
    >6fo1D (D:)
gahshirglglddaleprqasqgmvgqlaarraagvvlemiregkiagravliagqpgtg
ktaiamgmaqalgpdtpftaiagseifslemsktealtqafrrsigvrihtvslheidvi
nsreiksevreqinakvaewreegkaeiipgvlfidevhmldiesfsflnralesdmapv
limatnrgitrirgtsyqsphgipidlldrllivsttpysekdtkqilrirceeedvems
edaytvltrigletslryaiqlitaaslvcrkrkgtevqvddikrvyslfldesrstqym
keyqdaflfn

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6fo1E (E:)
matvtattkvpeirdvtrierigahshirglglddaleprqasqgmvgqlaarraagvvl
emiregkiagravliagqpgtgktaiamgmaqalgpdtpftaiagseifslemsktealt
qafrrsigvrikeeteiiegevveiqidrpatgtgskvgkltlkttemetiydlgtkmie
sltkdkvqagdvitidkatgkisklgrsftrardydamgsqtkfvqcpdgelqkrkevvh
tvslheidvinsrtqgflalfsgdtgeiksevreqinakvaewreegkaeiipgvlfide
vhmldiesfsflnralesdmapvlimatnrgitrirgtsyqsphgipidlldrllivstt
pysekdtkqilrirceeedvemsedaytvltrigletslryaiqlitaaslvcrkrkgte
vqvddikrvyslfldesrstqymkeyqdaflfnelkgetmdts

    Sequence, based on observed residues (ATOM records):
    >6fo1E (E:)
gahshirglglddaleprqasqgmvgqlaarraagvvlemiregkiagravliagqpgtg
ktaiamgmaqalgpdtpftaiagseifslemsktealtqafrrsigvrihtvslheidvi
nsrteiksevreqinakvaewreegkaeiipgvlfidevhmldiesfsflnralesdmap
vlimatnrgitrirgtsyqsphgipidlldrllivsttpysekdtkqilrirceeedvem
sedaytvltrigletslryaiqlitaaslvcrkrkgtevqvddikrvyslfldesrstqy
mkeyqdaflfn

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6fo1F (F:)
matvtattkvpeirdvtrierigahshirglglddaleprqasqgmvgqlaarraagvvl
emiregkiagravliagqpgtgktaiamgmaqalgpdtpftaiagseifslemsktealt
qafrrsigvrikeeteiiegevveiqidrpatgtgskvgkltlkttemetiydlgtkmie
sltkdkvqagdvitidkatgkisklgrsftrardydamgsqtkfvqcpdgelqkrkevvh
tvslheidvinsrtqgflalfsgdtgeiksevreqinakvaewreegkaeiipgvlfide
vhmldiesfsflnralesdmapvlimatnrgitrirgtsyqsphgipidlldrllivstt
pysekdtkqilrirceeedvemsedaytvltrigletslryaiqlitaaslvcrkrkgte
vqvddikrvyslfldesrstqymkeyqdaflfnelkgetmdts

    Sequence, based on observed residues (ATOM records):
    >6fo1F (F:)
igahshirglglddaleprqasqgmvgqlaarraagvvlemiregkiagravliagqpgt
gktaiamgmaqalgpdtpftaiagseifslemsktealtqafrrsigvrihtvslheidv
insreiksevreqinakvaewreegkaeiipgvlfidevhmldiesfsflnralesdmap
vlimatnrgitrirgtsyqsphgipidlldrllivsttpysekdtkqilrirceeedvem
sedaytvltrigletslryaiqlitaaslvcrkrkgtevqvddikrvyslfldesrstqy
mkeyqdaflfn

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6fo1G (G:)
mtsankaielqlqvkqnaeelqdfmrdlenwekdikqkdmelrrqngvpeenlppirngn
frkkkkgkakesskktreentknriksydyeawakldvdrildeldkddstheslsqese
seedgihvdsqkalvlkekgnkyfkqgkydeaidcytkgmdadpynpvlptnrasayfrl
kkfavaesdcnlavalnrsytkaysrrgaarfalqkleeakkdyervlelepnnfeatne
lrkisqalaskensypkeadivikstegerkqieaqqnkqqaisekdrgngffkegkyer
aiecytrgiaadganallpanramaylkiqkyeeaekdctqailldgsyskafarrgtar
tflgklneakqdfetvlllepgnkqavtelskikkeliekghwddvfldstqrqnvvkpi
dnpphpgstkplkkviieetgnliqtidvpdsttaaapennpinlanviaatgttskkns
sqddlfptsdtprakvlkieevsdtsslqpqaslkqdvcqsysekmpieieqkpaqfatt
vlppipansfqlesdfrqlksspdmlyqylkqiepslypklfqknldpdvfnqivkilhd
fyiekekpllifeilqrlselkrfdmavmfmsetekkiaralfnhidksglkdssveelk
krygg

    Sequence, based on observed residues (ATOM records):
    >6fo1G (G:)
vlppipansfqlesdfrqlksspdmlyqylkqiepslypklfqknldpdvfnqivkilhd
fyiekekpllifeilqrlselkrfdmavmfmsetekkiaralfnhidksglkdssveelk
krygg