PDB entry 6fny

View 6fny on RCSB PDB site
Description: crystal structure of a choline sulfatase from sinorhizobium melliloti
Deposited on 2018-02-05, released 2018-02-28
The last revision was dated 2018-04-04, with a file datestamp of 2018-03-29.
Experiment type: XRAY
Resolution: 2.79 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Choline-sulfatase
    Species: Sinorhizobium meliloti 1021 [TaxId:266834]
    Gene: betC, R00949, SMc00127
    Database cross-references and differences (RAF-indexed):
    • Uniprot O69787 (4-514)
      • expression tag (0-3)
  • Chain 'B':
    Compound: Choline-sulfatase
    Species: Sinorhizobium meliloti 1021 [TaxId:266834]
    Gene: betC, R00949, SMc00127
    Database cross-references and differences (RAF-indexed):
    • Uniprot O69787 (4-514)
      • expression tag (0-3)
  • Chain 'C':
    Compound: Choline-sulfatase
    Species: Sinorhizobium meliloti 1021 [TaxId:266834]
    Gene: betC, R00949, SMc00127
    Database cross-references and differences (RAF-indexed):
    • Uniprot O69787 (4-514)
      • expression tag (2-3)
  • Chain 'D':
    Compound: Choline-sulfatase
    Species: Sinorhizobium meliloti 1021 [TaxId:266834]
    Gene: betC, R00949, SMc00127
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Choline-sulfatase
    Species: Sinorhizobium meliloti 1021 [TaxId:266834]
    Gene: betC, R00949, SMc00127
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Choline-sulfatase
    Species: Sinorhizobium meliloti 1021 [TaxId:266834]
    Gene: betC, R00949, SMc00127
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Choline-sulfatase
    Species: Sinorhizobium meliloti 1021 [TaxId:266834]
    Gene: betC, R00949, SMc00127
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Choline-sulfatase
    Species: Sinorhizobium meliloti 1021 [TaxId:266834]
    Gene: betC, R00949, SMc00127
    Database cross-references and differences (RAF-indexed):
    • Uniprot O69787 (4-514)
      • expression tag (2-3)
  • Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6fnyA (A:)
gdpvttgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcapa
rasfmagqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeer
lttdiypadfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqkly
qlsrenddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsq
rimlscdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdh
gdmlgerglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleev
rpwtdgvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdlea
dpleltnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngay
ypwdhqplqkaserymrnhmnldtleeskryprge

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6fnyB (B:)
gdpvttgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcapa
rasfmagqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeer
lttdiypadfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqkly
qlsrenddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsq
rimlscdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdh
gdmlgerglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleev
rpwtdgvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdlea
dpleltnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngay
ypwdhqplqkaserymrnhmnldtleeskryprge

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6fnyC (C:)
gdpvttgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcapa
rasfmagqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeer
lttdiypadfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqkly
qlsrenddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsq
rimlscdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdh
gdmlgerglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleev
rpwtdgvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdlea
dpleltnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngay
ypwdhqplqkaserymrnhmnldtleeskryprge

    Sequence, based on observed residues (ATOM records):
    >6fnyC (C:)
pvttgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcapara
sfmagqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeerlt
tdiypadfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqklyql
srenddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsqri
mlscdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdhgd
mlgerglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleevrp
wtdgvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdleadp
leltnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngayyp
wdhqplqkaserymrnhmnldtleeskryprge

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6fnyD (D:)
gdpvttgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcapa
rasfmagqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeer
lttdiypadfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqkly
qlsrenddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsq
rimlscdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdh
gdmlgerglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleev
rpwtdgvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdlea
dpleltnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngay
ypwdhqplqkaserymrnhmnldtleeskryprge

    Sequence, based on observed residues (ATOM records):
    >6fnyD (D:)
tgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcaparasfm
agqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeerlttdi
ypadfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqklyqlsre
nddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsqrimls
cdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdhgdmlg
erglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleevrpwtd
gvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdleadplel
tnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngayypwdh
qplqkaserymrnhmnldtleeskryprge

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6fnyE (E:)
gdpvttgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcapa
rasfmagqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeer
lttdiypadfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqkly
qlsrenddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsq
rimlscdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdh
gdmlgerglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleev
rpwtdgvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdlea
dpleltnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngay
ypwdhqplqkaserymrnhmnldtleeskryprge

    Sequence, based on observed residues (ATOM records):
    >6fnyE (E:)
tgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcaparasfm
agqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeerlttdi
ypadfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqklyqlsre
nddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsqrimls
cdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdhgdmlg
erglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleevrpwtd
gvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdleadplel
tnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngayypwdh
qplqkaserymrnhmnldtleeskryprge

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6fnyF (F:)
gdpvttgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcapa
rasfmagqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeer
lttdiypadfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqkly
qlsrenddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsq
rimlscdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdh
gdmlgerglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleev
rpwtdgvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdlea
dpleltnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngay
ypwdhqplqkaserymrnhmnldtleeskryprge

    Sequence, based on observed residues (ATOM records):
    >6fnyF (F:)
gkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcaparasfma
gqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeerlttdiy
padfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqklyqlsren
ddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsqrimlsc
dyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdhgdmlge
rglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleevrpwtdg
vslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdleadplelt
nlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngayypwdhq
plqkaserymrnhmnldtleeskryprge

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6fnyG (G:)
gdpvttgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcapa
rasfmagqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeer
lttdiypadfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqkly
qlsrenddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsq
rimlscdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdh
gdmlgerglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleev
rpwtdgvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdlea
dpleltnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngay
ypwdhqplqkaserymrnhmnldtleeskryprge

    Sequence, based on observed residues (ATOM records):
    >6fnyG (G:)
gkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcaparasfma
gqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeerlttdiy
padfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqklyqlsren
ddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsqrimlsc
dyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdhgdmlge
rglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleevrpwtdg
vslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdleadplelt
nlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngayypwdhq
plqkaserymrnhmnldtleeskryprge

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6fnyH (H:)
gdpvttgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcapa
rasfmagqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeer
lttdiypadfgwtpdyrkpgeridwwyhnlgsvtgagvaeitnqmeyddevaflanqkly
qlsrenddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsq
rimlscdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdh
gdmlgerglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleev
rpwtdgvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdlea
dpleltnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngay
ypwdhqplqkaserymrnhmnldtleeskryprge

    Sequence, based on observed residues (ATOM records):
    >6fnyH (H:)
pvttgkpniliimvdqlngklfpdgpadflhapnlkalakrsarfhnnytssplcapara
sfmagqlpsrtrvydnaaeyqssiptyahhlrragyytalsgkmhfvgpdqlhgfeerlt
tdiypadfgwtpdyrkridwwyhnlgsvtgagvaeitnqmeyddevaflanqklyqlsre
nddesrrpwcltvsfthphdpyvarrkfwdlyedcehltpevgaipldeqdphsqrimls
cdyqnfdvteenvrrsrrayfanisyldekvgelidtltrtrmlddtlilfcsdhgdmlg
erglwfkmnffegsarvplmiagpgiapglhltptsnldvtptladlagisleevrpwtd
gvslvpmvngvertepvlmeyaaeasyaplvairegkwkyvycaldpeqlfdleadplel
tnlaenprgpvdqatltafrdmraahwdmeafdaavresqarrwvvyealrngayypwdh
qplqkaserymrnhmnldtleeskryprge