PDB entry 6fnp

View 6fnp on RCSB PDB site
Description: crystal structure of ecf-cbrt, a cobalamin transporter
Deposited on 2018-02-05, released 2018-07-25
The last revision was dated 2018-07-25, with a file datestamp of 2018-07-20.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Membrane protein
    Species: Lactobacillus delbrueckii [TaxId:1584]
    Gene: AT236_00087, CFL1_01875, LBUL87_0070, SB57_03475
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Energy-coupling factor transporter ATP-binding protein EcfA1
    Species: Lactobacillus delbrueckii [TaxId:1584]
    Gene: ecfA1, cbiO1, Ldb0424
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1GBJ0 (19-End)
      • expression tag (18)
  • Chain 'C':
    Compound: Energy-coupling factor transporter ATP-binding protein EcfA2
    Species: Lactobacillus delbrueckii [TaxId:1584]
    Gene: ecfA2, cbiO2, Ldb0425
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Energy-coupling factor transporter transmembrane protein EcfT
    Species: Lactobacillus delbrueckii [TaxId:1584]
    Gene: ecfT, AT236_00396, CFL1_00754, SB57_06620
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Membrane protein
    Species: Lactobacillus delbrueckii [TaxId:1584]
    Gene: AT236_00087, CFL1_01875, LBUL87_0070, SB57_03475
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Energy-coupling factor transporter ATP-binding protein EcfA1
    Species: Lactobacillus delbrueckii [TaxId:1584]
    Gene: ecfA1, cbiO1, Ldb0424
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1GBJ0 (19-End)
      • expression tag (18)
  • Chain 'G':
    Compound: Energy-coupling factor transporter ATP-binding protein EcfA2
    Species: Lactobacillus delbrueckii [TaxId:1584]
    Gene: ecfA2, cbiO2, Ldb0425
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Energy-coupling factor transporter transmembrane protein EcfT
    Species: Lactobacillus delbrueckii [TaxId:1584]
    Gene: ecfT, AT236_00396, CFL1_00754, SB57_06620
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fnpA (A:)
mqtkeryqlqrltllalltamcvvlrifkiidipnvqpvtdiimlttlelgagtgillai
lvmvisniflgfgiwtlpqifayaacaltvalfarllplksrkffwlqellagflgleyg
ffvslgmagwggwaafiaywvsgltfdlyhaagnlafypifylplvlgldrfkkkagwkq
na

    Sequence, based on observed residues (ATOM records):
    >6fnpA (A:)
yqlqrltllalltamcvvlrifkiidipnvqpvtdiimlttlelgagtgillailvmvis
niflgfgiwtlpqifayaacaltvalfarwlqellagflgleygffvslgmagwggwaaf
iaywvsgltfdlyhaagnlafypifylplvlgdrfkkka

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fnpB (B:)
mhhhhhhhhhhgenlyfqgsdniisfdhvtftypdsprpalsdlsfaiergswtalighn
gsgkstvsklingllapddldkssitvdgvklgadtvwevrekvgivfqnpdnqfvgatv
sddvafglenravprpemlkivaqavadvgmadyadsepsnlsggqkqrvaiagilavkp
qviildestsmldpegkeqildlvrkikednnltvisithdleeaagadqvlvlddgqll
dqgkpeeifpkvemlkrigldipfvyrlkqllkergivlpdeidddeklvqslwqlnskm

    Sequence, based on observed residues (ATOM records):
    >6fnpB (B:)
gsdniisfdhvtftypdsprpalsdlsfaiergswtalighngsgkstvsklingllapd
dldkssitvdgvklgadtvwevrekvgivfqnpdnqfvgatvsddvafglenravprpem
lkivaqavadvgmadyadsepsnlsggqkqrvaiagilavkpqviildestsmldpegke
qildlvrkikednnltvisithdleeaagadqvlvlddgqlldqgkpeeifpkvemlkri
gldipfvyrlkqllkergivlpdeidddeklvqslwqlns

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6fnpC (C:)
maikfenvsyvyspgspleaigldqlnfsleegkfialvghtgsgkstlmqhfnallkpt
sgkieiagytitpetgnkglkdlrrkvslafqfseaqlfentvlkdveygprnfgfsede
areaalkwlkkvglkddliehspfdlsggqmrrvalagvlayepeiicldepaagldpmg
rlemmqlfkdyqaaghtvilvthnmddvadyaddvlalehgrlikhaspkevfkdsewlq
khhlaeprsarfaakleaaglklpgqpltmpeladaikqslkggehe

    Sequence, based on observed residues (ATOM records):
    >6fnpC (C:)
maikfenvsyvyspgspleaigldqlnfsleegkfialvghtgsgkstlmqhfnallkpt
sgkieiagytitpetgnkglkdlrrkvslafqfseaqlfentvlkdveygprnfgfsede
areaalkwlkkvglkddliehspfdlsggqmrrvalagvlayepeiicldepaagldpmg
rlemmqlfkdyqaaghtvilvthnmddvadyaddvlalehgrlikhaspkevfkdsewlq
khhlaeprsarfaakleaaglklpgqpltmpeladaikqslk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6fnpD (D:)
mskiiigrylpgttfvyrvdprakllttfyfiimiflannwvsylvisifglayvfatgl
karvfwdgvkpmiwmivftsllqtffmaggkvywhwwiftlsseglinglyvfirfamii
lvstvmtvttkpleiadamewmltplklfkvnvgmislvisialrfvptlfdqtvkimna
qrsrgadfndgglvkraksvvpmlvplfidslevaldlstamesrgykgsegrtryrile
wskvdlipvaycllltilmittrkh

    Sequence, based on observed residues (ATOM records):
    >6fnpD (D:)
igrylpgttfvyrvdprakllttfyfiimiflannwvsylvisifglayvfatglkarvf
wdgvkpmiwmivftsllqtffmaggkvywhwwiftlsseglinglyvfirfamiilvstv
mtvttkpleiadamewmltplklfkvnvgmislvisialrfvptlfdqtvkimnaqrsrg
adfndgglvkraksvvpmlvplfidslevaldlstamesrgykgsegrtryrilewskvd
lipvaycllltilmittrk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6fnpE (E:)
mqtkeryqlqrltllalltamcvvlrifkiidipnvqpvtdiimlttlelgagtgillai
lvmvisniflgfgiwtlpqifayaacaltvalfarllplksrkffwlqellagflgleyg
ffvslgmagwggwaafiaywvsgltfdlyhaagnlafypifylplvlgldrfkkkagwkq
na

    Sequence, based on observed residues (ATOM records):
    >6fnpE (E:)
qlqrltllalltamcvvlrifkiidipnvqpvtdiimlttlelgagtgillailvmvisn
iflgfgayaacaltvalfarwlqellagflgleygffvslgmagwggwaafiaywvsglt
fdlyhaagnlaf

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6fnpF (F:)
mhhhhhhhhhhgenlyfqgsdniisfdhvtftypdsprpalsdlsfaiergswtalighn
gsgkstvsklingllapddldkssitvdgvklgadtvwevrekvgivfqnpdnqfvgatv
sddvafglenravprpemlkivaqavadvgmadyadsepsnlsggqkqrvaiagilavkp
qviildestsmldpegkeqildlvrkikednnltvisithdleeaagadqvlvlddgqll
dqgkpeeifpkvemlkrigldipfvyrlkqllkergivlpdeidddeklvqslwqlnskm

    Sequence, based on observed residues (ATOM records):
    >6fnpF (F:)
gsdniisfdhvtftypdsprpalsdlsfaiergswtalighngsgkstvsklingllapd
dldkssitvdgvklgadtvwevrekvgivfqnpdnqfvgatvsddvafglenravprpem
lkivaqavadvgmadyadsepsnlsggqkqrvaiagilavkpqviildestsmldpegke
qildlvrkikednnltvisithdleeaagadqvlvlddgqlldqgkpeeifpkvemlkri
gldipfvyrlkqllkergivlpdeidddeklvqslwqlns

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6fnpG (G:)
maikfenvsyvyspgspleaigldqlnfsleegkfialvghtgsgkstlmqhfnallkpt
sgkieiagytitpetgnkglkdlrrkvslafqfseaqlfentvlkdveygprnfgfsede
areaalkwlkkvglkddliehspfdlsggqmrrvalagvlayepeiicldepaagldpmg
rlemmqlfkdyqaaghtvilvthnmddvadyaddvlalehgrlikhaspkevfkdsewlq
khhlaeprsarfaakleaaglklpgqpltmpeladaikqslkggehe

    Sequence, based on observed residues (ATOM records):
    >6fnpG (G:)
maikfenvsyvyspgspleaigldqlnfsleegkfialvghtgsgkstlmqhfnallkpt
sgkieiagytitpetgnkglkdlrrkvslafqfseaqlfentvlkdveygprnfgfsede
areaalkwlkkvglkddliehspfdlsggqmrrvalagvlayepeiicldepaagldpmg
rlemmqlfkdyqaaghtvilvthnmddvadyaddvlalehgrlikhaspkevfkdsewlq
khhlaeprsarfaakleaaglklpgqpltmpeladaikqslk

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6fnpH (H:)
mskiiigrylpgttfvyrvdprakllttfyfiimiflannwvsylvisifglayvfatgl
karvfwdgvkpmiwmivftsllqtffmaggkvywhwwiftlsseglinglyvfirfamii
lvstvmtvttkpleiadamewmltplklfkvnvgmislvisialrfvptlfdqtvkimna
qrsrgadfndgglvkraksvvpmlvplfidslevaldlstamesrgykgsegrtryrile
wskvdlipvaycllltilmittrkh

    Sequence, based on observed residues (ATOM records):
    >6fnpH (H:)
igrylpgttfvyrvdprakllttfyfiimiflannwvsylvisifglayvfatglkarvf
wdgvkpmiwmivftsllqtffmaggkvywhwwiftlsseglinglyvfirfamiilvstv
mtvttkpleiadamewmltplklfkvnvgmislvisialrfvptlfdqtvkimnaqrsrg
adfndgglvkraksvvpmlvplfidslevaldlstamesrgykgsegrtryrilewskvd
lipvaycllltilmittrk