PDB entry 6fm4

View 6fm4 on RCSB PDB site
Description: the crystal structure of s. aureus gyrase complex with id-130 and dna
Deposited on 2018-01-30, released 2019-07-10
The last revision was dated 2019-09-04, with a file datestamp of 2019-08-30.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: DNA gyrase subunit B,DNA gyrase subunit B,DNA gyrase subunit A
    Species: Staphylococcus aureus (strain N315) [TaxId:158879]
    Gene: gyrA, SA0006
    Database cross-references and differences (RAF-indexed):
    • Uniprot P66937 (Start-134)
      • linker (135-136)
    • Uniprot P66937 (137-End)
    • Uniprot Q99XG5 (Start-691)
      • engineered mutation (323)
  • Chain 'D':
    Compound: DNA gyrase subunit B,DNA gyrase subunit B,DNA gyrase subunit A
    Species: Staphylococcus aureus (strain N315) [TaxId:158879]
    Gene: gyrA, SA0006
    Database cross-references and differences (RAF-indexed):
    • Uniprot P66937 (Start-134)
      • linker (135-136)
    • Uniprot P66937 (137-End)
    • Uniprot Q99XG5
      • engineered mutation (323)
  • Chain 'E':
    Compound: DNA (5'-5ua*d(p*gp*cp*cp*gp*tp*ap*gp*gp*gp*cp*cp*cp*tp*ap*cp*gp*gp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-5ua*d(p*gp*cp*cp*gp*tp*ap*gp*gp*gp*cp*cp*cp*tp*ap*cp*gp*gp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: DU5, MN, 5UA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fm4B (B:)
mdvaslpgkladcsskspeeceiflvegdsaggstksgrdsrtqailplrgkilnvekar
ldrilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfm
rplieagyvyiaqpptgykglgemnadqlwettmnpehrallqvkledaieadqtfemlm
gdvvenrrqfiednavyanldfaelpqsrinernitsemresfldyamsvivaralpdvr
dglkpvhrrilyglneqgmtpdksykksarivgdvmgkyhphgdssiyeamvrmaqdfsy
ryplvdgqgnfgsmdgdgaaamrftearmtkitlellrdinkdtidfidnydgnerepsv
lparfpnllangasgiavgmatnipphnltelingvlslsknpdisiaelmediegpdfp
taglilgksgirrayetgrgsiqmrsravieergggrqrivvteipfqvnkarmiekiae
lvrdkkidgitdlrdetslrtgvrvvidvrkdanasvilnnlykqtplqtsfgvnmialv
ngrpklinlkealvhylehqktvvrrrtqynlrkakdrahileglrialdhideiistir
esdtdkvameslqqrfklsekqaqaildmrlrrltglerdkieaeynellnyiseletil
adeevllqlvrdelteirdrfgddrrteiqlg

    Sequence, based on observed residues (ATOM records):
    >6fm4B (B:)
kladcsskspeeceiflvegdsaggstksgrdsrtqailplrgkilnvekarldrilnnn
eirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfmrplieagy
vyiaqpptgykglgemnadqlwettmnpehrallqvkledaieadqtfemlmgdvvenrr
qfiednavyanernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmt
pdksykksarivgdvmgkyhphgdssiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaa
amrftearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgiavgm
atnipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrg
siqmrsravieergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslr
tgvrvvidvrkdanasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehq
ktvvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklse
kqaqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdr
fgddrrteiqlg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6fm4D (D:)
mdvaslpgkladcsskspeeceiflvegdsaggstksgrdsrtqailplrgkilnvekar
ldrilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfm
rplieagyvyiaqpptgykglgemnadqlwettmnpehrallqvkledaieadqtfemlm
gdvvenrrqfiednavyanldfaelpqsrinernitsemresfldyamsvivaralpdvr
dglkpvhrrilyglneqgmtpdksykksarivgdvmgkyhphgdssiyeamvrmaqdfsy
ryplvdgqgnfgsmdgdgaaamrftearmtkitlellrdinkdtidfidnydgnerepsv
lparfpnllangasgiavgmatnipphnltelingvlslsknpdisiaelmediegpdfp
taglilgksgirrayetgrgsiqmrsravieergggrqrivvteipfqvnkarmiekiae
lvrdkkidgitdlrdetslrtgvrvvidvrkdanasvilnnlykqtplqtsfgvnmialv
ngrpklinlkealvhylehqktvvrrrtqynlrkakdrahileglrialdhideiistir
esdtdkvameslqqrfklsekqaqaildmrlrrltglerdkieaeynellnyiseletil
adeevllqlvrdelteirdrfgddrrteiqlg

    Sequence, based on observed residues (ATOM records):
    >6fm4D (D:)
kladcsskspeeceiflvegdsaggstksgrdsrtqailplrgkilnvekarldrilnnn
eirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfmrplieagy
vyiaqpptgykglgemnadqlwettmnpehrallqvkledaieadqtfemlmgdvvenrr
qfiednavynernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmtp
dksykksarivgdvmgkyhphgdssiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaa
mrftearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgiavgma
tnipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgs
iqmrsravieergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrt
gvrvvidvrkdanasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqk
tvvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsek
qaqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrf
gddrrteiql

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.