PDB entry 6flu

View 6flu on RCSB PDB site
Description: photorhabdus asymbiotica lectin (phl) in complex with synthetic c- fucoside
Deposited on 2018-01-28, released 2019-02-06
The last revision was dated 2019-10-30, with a file datestamp of 2019-10-25.
Experiment type: XRAY
Resolution: 1.78 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Photorhabdus asymbitoca lectin PHL
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_00698
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Photorhabdus asymbitoca lectin PHL
    Species: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) [TaxId:553480]
    Gene: PAU_00698
    Database cross-references and differences (RAF-indexed):
  • Heterogens: DTK, NA, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fluA (A:)
mqpintsnpdntasyvkdeveitsstialseivsvvntsdgrlevfgvgtdkavwhnrqm
aphtgspwsgwsslkgqvtskpvvyintdgrlevfargtdnalwhiwqtatnagwsnwqs
lggvitsnpaiyantdgrlevfargadnalwhisqttahsgpwsswaslngvitsnptvh
insdgrlevfargtdnalwhiwqtapdsnlwssweslngiitsdpvvidtadgrlevfar
gadnalwhiwqtishsgpwsgwqslngvitsapavakncdnrleafargtdnalwhtwqt
vshsgpwsswqslngvitsaptavrdadgrlevfargtdnalwltwqtasswspwislgg
vlidasaik

    Sequence, based on observed residues (ATOM records):
    >6fluA (A:)
tsstialseivsvvntsdgrlevfgvgtdkavwhnrqmaphtgspwsgwsslkgqvtskp
vvyintdgrlevfargtdnalwhiwqtatnagwsnwqslggvitsnpaiyantdgrlevf
argadnalwhisqttahsgpwsswaslngvitsnptvhinsdgrlevfargtdnalwhiw
qtapdsnlwssweslngiitsdpvvidtadgrlevfargadnalwhiwqtishsgpwsgw
qslngvitsapavakncdnrleafargtdnalwhtwqtvshsgpwsswqslngvitsapt
avrdadgrlevfargtdnalwltwqtasswspwislggvlidasaik

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fluB (B:)
mqpintsnpdntasyvkdeveitsstialseivsvvntsdgrlevfgvgtdkavwhnrqm
aphtgspwsgwsslkgqvtskpvvyintdgrlevfargtdnalwhiwqtatnagwsnwqs
lggvitsnpaiyantdgrlevfargadnalwhisqttahsgpwsswaslngvitsnptvh
insdgrlevfargtdnalwhiwqtapdsnlwssweslngiitsdpvvidtadgrlevfar
gadnalwhiwqtishsgpwsgwqslngvitsapavakncdnrleafargtdnalwhtwqt
vshsgpwsswqslngvitsaptavrdadgrlevfargtdnalwltwqtasswspwislgg
vlidasaik

    Sequence, based on observed residues (ATOM records):
    >6fluB (B:)
tialseivsvvntsdgrlevfgvgtdkavwhnrqmaphtgspwsgwsslkgqvtskpvvy
intdgrlevfargtdnalwhiwqtatnagwsnwqslggvitsnpaiyantdgrlevfarg
adnalwhisqttahsgpwsswaslngvitsnptvhinsdgrlevfargtdnalwhiwqta
pdsnlwssweslngiitsdpvvidtadgrlevfargadnalwhiwqtishsgpwsgwqsl
ngvitsapavakncdnrleafargtdnalwhtwqtvshsgpwsswqslngvitsaptavr
dadgrlevfargtdnalwltwqtasswspwislggvlidasaik