PDB entry 6fky

View 6fky on RCSB PDB site
Description: crystal structure of zebrafish sirtuin 5 in complex with 3- (benzylthio)succinyl-cps1 peptide
Deposited on 2018-01-25, released 2018-03-21
The last revision was dated 2018-04-04, with a file datestamp of 2018-03-29.
Experiment type: XRAY
Resolution: 2.98 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NAD-dependent protein deacylase sirtuin-5, mitochondrial
    Species: Danio rerio [TaxId:7955]
    Gene: sirt5, si:ch211-121a2.1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: NAD-dependent protein deacylase sirtuin-5, mitochondrial
    Species: Danio rerio [TaxId:7955]
    Gene: sirt5, si:ch211-121a2.1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 3(R)-(phenylthio)succinyl-CPS1 peptide
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FKY (0-7)
  • Chain 'I':
    Compound: 3(R)-(phenylthio)succinyl-CPS1 peptide
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6FKY (0-7)
  • Heterogens: DZK, E9N, ZN, EPE, NA, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fkyA (A:)
gidpftkmtrpssdltafrehfakakhiaiitgagvsaesgvptfrgpggfwrkwqaqdl
atpeafsrdpslvwefyhyrrevmrskmpnpahlaiaecearlgqqgrsvviitqnidel
hhragskhvyeihgslfktrcmscgevkanhkspicpaldgkgapdpntkearipvellp
rcerkscngllrphvvwfgetldsdiltaverelekcdlclvvgtssivypaamfapqva
srgvpvaefnmectpatqrfkyhfegpcgstlppalerheseav

    Sequence, based on observed residues (ATOM records):
    >6fkyA (A:)
dltafrehfakakhiaiitgagvsaesgvptfrgpggfwrkwqaqdlatpeafsrdpslv
wefyhyrrevmrskmpnpahlaiaecearlgqqgrsvviitqnidelhhragskhvyeih
gslfktrcmscgevkanhkspicpaldgkgapdpntkearipvellprcerkscngllrp
hvvwfgetldsdiltaverelekcdlclvvgtssivypaamfapqvasrgvpvaefnmec
tpatqkyhfegpcgstlppale

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fkyB (B:)
gidpftkmtrpssdltafrehfakakhiaiitgagvsaesgvptfrgpggfwrkwqaqdl
atpeafsrdpslvwefyhyrrevmrskmpnpahlaiaecearlgqqgrsvviitqnidel
hhragskhvyeihgslfktrcmscgevkanhkspicpaldgkgapdpntkearipvellp
rcerkscngllrphvvwfgetldsdiltaverelekcdlclvvgtssivypaamfapqva
srgvpvaefnmectpatqrfkyhfegpcgstlppalerheseav

    Sequence, based on observed residues (ATOM records):
    >6fkyB (B:)
ssdltafrehfakakhiaiitgagvsaesgvptfrgpggfwrkwqaqdlatpeafsrdps
lvwefyhyrrevmrskmpnpahlaiaecearlgqqgrsvviitqnidelhhragskhvye
ihgslfktrcmscgevkanhkspicpaldgkgapdpntkearipvellprcerkscngll
rphvvwfgetldsdiltaverelekcdlclvvgtssivypaamfapqvasrgvpvaefnm
ectpatqrfkyhfegpcgstlppale

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6fkyC (C:)
xvlkeygv

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6fkyI (I:)
xvlkeygv