PDB entry 6fkn

View 6fkn on RCSB PDB site
Description: drosophila plexin a in complex with semaphorin 1b
Deposited on 2018-01-24, released 2019-02-06
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 4.8 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Plexin A, isoform A
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: PlexA, BcDNA:GM05237, D-Plex A, DmelCG11081, DPlexA, lincRNA.927, plex, plex A, Plex1, plexA, PlexA1, CG11081, Dmel_CG11081
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: MIP07328p
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Sema1b, Sema-1b, Sema-1b-RB, semaphorin-like, CG6446, Dmel_CG6446
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Plexin A, isoform A
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: PlexA, BcDNA:GM05237, D-Plex A, DmelCG11081, DPlexA, lincRNA.927, plex, plex A, Plex1, plexA, PlexA1, CG11081, Dmel_CG11081
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: MIP07328p
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Sema1b, Sema-1b, Sema-1b-RB, semaphorin-like, CG6446, Dmel_CG6446
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fknA (A:)
    etgqtlaaniwsdkttaqnepinltnanapiknaknlnstitnvaafdtklnhllvdtit
    grvfvggvnrlyqlspdlelsetvktgpqndsvecsildcplnavrsptdnynkvllidr
    atsrliacgslfqgtctvrnlqnvsiiehevpdavvandansstvafiapgppqhpvtnv
    myvgvtytnnspyrseipavasrslektkmfqiassavttgtrtfinsyaretyfvnyvy
    gfsserfsyflttqlkhshhsspkeyitklvricqedsnyysyteipvecisdaqggtkf
    nlvqagflgkpssdlaqslgisiqddvlfavfskgegntptnnsalciyslksirrkfmq
    nikscfngsgmrgldfispsmpcvltklqtigedfcgldvnsplggetpitsvpvamfnt
    kltsvaatstsgytvvfvgtsdgflkkvviesssianeyasfavdlgseinrdmqfdnqn
    lyiyvmsktkvskvkvfdcsdyktcgdclgardpycgwcslenkcsprsncqddandply
    wvsyktgkcttitsvvphqlqrttartleliidhlpqlkenlicafttedkalftnatkk
    rngvncttprtdmlpqieqgkhhftaklsvrtrngpdlvstdftffdcsthssctrcvss
    efpcdwcveahrcthdtaencrndilvtgvsrigpsyrsgpgfcptgtkhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6fknA (A:)
    nstitnvaafdtklnhllvdtitgrvfvggvnrlyqlspdlelsetvktgpqndsvecsi
    ldcplavrsptdnynkvllidratsrliacgslfqgtctvrnlqnvsiiehevpdavvan
    dansstvafiapgppqhpvtnvmyvgvtytnnspyrseipavasrslektkmfqiassav
    ttgtrtfinsyaretyfvnyvygfsserfsyflttqlkhshhsspkeyitklvricqeds
    nyysyteipvecisdaqggtkfnlvqagflgkpssdlaqslgisiqddvlfavfskgegn
    tptnnsalciyslksirrkfmqnikscfngsgmrgldfispsmpcvltklqtigedfcgl
    dvnsplggetpitsvpvamfntkltsvaatstsgytvvfvgtsdgflkkvviesssiane
    yasfavdlgseinrdmqfdnqnlyiyvmsktkvskvkvfdcsdyktcgdclgardpycgw
    cslenkcsprsncqddandplywvsyktgkc
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fknB (B:)
    etgdvkpdlqtkqdkvlahfignstdyfkildhndefvlvgakdviynvslnglkeiarl
    ewhstdadrelcalkgkhewdchnylrvyalrpngevllcgtnsykprcrhytpvevsse
    eagsaghahamryevsrdveaqglcpyspahnstyafadghlysatvadfsggdpliyre
    nlrteqydlkqlnqpdfvgaierngyvlfffrelsmevmnfgkavysrvarvckndrggp
    yshgkswtsflkarlncsvpgefpfyfdeiqaispivesgsksliyavfttsvnaipgsa
    vcafnvddilaafdgefksqkdsqshwlpvereqvpkprpgqcvedsrtltsiavnfikn
    hplmeeavpavhgrplltkvnlhhrltaiavhpqvkslsgayydviysgtddgkvtkfin
    ilsthpnstvdrlktvvisemqvlplgtpirelvistsknslvvvsdgslvsvplhhcsh
    ivdclgclslqdpicawdlqthecknlatsqhkfgtktylqslnstkkaaallcphiprd
    apgaetvsfvtmapppteeqkllysnvgsgtkhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6fknB (B:)
    fignstdyfkildhndefvlvgakdviynvslnglkeiarlewhstdadrelcalkgkhe
    wdchnylrvyalrpngevllcgtnsykprcrhytpryevsrdveaqglcpyspahnstya
    fadghlysatvadfsggdpliyrenlrteqydlkqlnqpdfvgaierngyvlfffrelsm
    evmnfgkavysrvarvckndrggpyshgkswtsflkarlncsvgefpfyfdeiqaispiv
    esgsksliyavfttsvnaipgsavcafnvddilaafdgefksgqcvedsrtltsiavnfi
    knhplmeeavpavhgrplltkvnlhhrltaiavhpqvkslsgayydviysgtddgkvtkf
    inilsthpnstvdrlktvvisemqvlplgtpirelvistsknslvvvsdgslvsvplhhc
    shivdclgclslqdpicawdlqthecknlatsqhkfgtktylqslnstkkaaallcph
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6fknC (C:)
    etgqtlaaniwsdkttaqnepinltnanapiknaknlnstitnvaafdtklnhllvdtit
    grvfvggvnrlyqlspdlelsetvktgpqndsvecsildcplnavrsptdnynkvllidr
    atsrliacgslfqgtctvrnlqnvsiiehevpdavvandansstvafiapgppqhpvtnv
    myvgvtytnnspyrseipavasrslektkmfqiassavttgtrtfinsyaretyfvnyvy
    gfsserfsyflttqlkhshhsspkeyitklvricqedsnyysyteipvecisdaqggtkf
    nlvqagflgkpssdlaqslgisiqddvlfavfskgegntptnnsalciyslksirrkfmq
    nikscfngsgmrgldfispsmpcvltklqtigedfcgldvnsplggetpitsvpvamfnt
    kltsvaatstsgytvvfvgtsdgflkkvviesssianeyasfavdlgseinrdmqfdnqn
    lyiyvmsktkvskvkvfdcsdyktcgdclgardpycgwcslenkcsprsncqddandply
    wvsyktgkcttitsvvphqlqrttartleliidhlpqlkenlicafttedkalftnatkk
    rngvncttprtdmlpqieqgkhhftaklsvrtrngpdlvstdftffdcsthssctrcvss
    efpcdwcveahrcthdtaencrndilvtgvsrigpsyrsgpgfcptgtkhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6fknC (C:)
    nstitnvaafdtklnhllvdtitgrvfvggvnrlyqlspdlelsetvktgpqndsvecsi
    ldcplnavrsptdnynkvllidratsrliacgslfqgtctvrnlqnvsiiehevpdavva
    ndansstvafiapgppqhpvtnvmyvgvtytnnspyrseipavasrslektkmfqiassa
    vttgtrtfinsyaretyfvnyvygfsserfsyflttqlkhshhsspkeyitklvricqed
    snyysyteipvecisdaqggtkfnlvqagflgkpssdlaqslgisiqddvlfavfskgeg
    ntptnnsalciyslksirrkfmqnikscfngsgmrgldfispsmpcvltklqtigedfcg
    ldvnsplggetpitsvpvamfntkltsvaatstsgytvvfvgtsdgflkkvviesssian
    eyasfavdlgseinrdmqfdnqnlyiyvmsktkvskvkvfdcsdyktcgdclgardpycg
    wcslenkcsprsncqddandplywvsyktgkc
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6fknD (D:)
    etgdvkpdlqtkqdkvlahfignstdyfkildhndefvlvgakdviynvslnglkeiarl
    ewhstdadrelcalkgkhewdchnylrvyalrpngevllcgtnsykprcrhytpvevsse
    eagsaghahamryevsrdveaqglcpyspahnstyafadghlysatvadfsggdpliyre
    nlrteqydlkqlnqpdfvgaierngyvlfffrelsmevmnfgkavysrvarvckndrggp
    yshgkswtsflkarlncsvpgefpfyfdeiqaispivesgsksliyavfttsvnaipgsa
    vcafnvddilaafdgefksqkdsqshwlpvereqvpkprpgqcvedsrtltsiavnfikn
    hplmeeavpavhgrplltkvnlhhrltaiavhpqvkslsgayydviysgtddgkvtkfin
    ilsthpnstvdrlktvvisemqvlplgtpirelvistsknslvvvsdgslvsvplhhcsh
    ivdclgclslqdpicawdlqthecknlatsqhkfgtktylqslnstkkaaallcphiprd
    apgaetvsfvtmapppteeqkllysnvgsgtkhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6fknD (D:)
    fignstdyfkildhndefvlvgakdviynvslnglkeiarlewhstdadrelcalkgkhe
    wdchnylrvyalrpngevllcgtnsykprcrhytpryevsrdveaqglcpyspahnstya
    fadghlysatvadfsggdpliyrenlrteqydlkqlnqpdfvgaierngyvlfffrelsm
    evmnfgkavysrvarvckndrggpyshgkswtsflkarlncsvpefpfyfdeiqaispiv
    esgsksliyavfttsvnaipgsavcafnvddilaafdgefksqkgqcvedsrtltsiavn
    fiknhplmeeavpavhgrplltkvnlhhrltaiavhpqvkslsgayydviysgtddgkvt
    kfinilsthpnstvdrlktvvisemqvlplgtpirelvistsknslvvvsdgslvsvplh
    hcshivdclgclslqdpicawdlqthecknlatktylqslnstkkaaallcph