PDB entry 6fi8

View 6fi8 on RCSB PDB site
Description: crystal structure of the is608 transposase in complex with left end 29-mer dna hairpin and a 6-mer dna representing the intact target site: pre-cleavage target capture complex
Deposited on 2018-01-17, released 2018-03-28
The last revision was dated 2018-05-16, with a file datestamp of 2018-05-11.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative transposase
    Species: Helicobacter pylori [TaxId:210]
    Gene: BB387_02765, BB390_06935, BB392_05440, BB394_07800, BB413_07925, BB437_07715, BB438_04880, BB447_07970, BB453_04885, BB461_01775, BB469_00740, BFR58_04045, BFR58_04080, BFR58_04135, BFR58_07690, BFR58_08055, BGL67_05025, BGL76_01750, BGL76_01790, BGL76_01830, BGL76_03945, BGL76_04370, BGL76_05875, BGL76_06710, BGL85_00790
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Putative transposase
    Species: Helicobacter pylori [TaxId:210]
    Gene: BB387_02765, BB390_06935, BB392_05440, BB394_07800, BB413_07925, BB437_07715, BB438_04880, BB447_07970, BB453_04885, BB461_01775, BB469_00740, BFR58_04045, BFR58_04080, BFR58_04135, BFR58_07690, BFR58_08055, BGL67_05025, BGL76_01750, BGL76_01790, BGL76_01830, BGL76_03945, BGL76_04370, BGL76_05875, BGL76_06710, BGL85_00790
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA 29-mer (le29)
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Chain 'D':
    Compound: DNA 29-mer (le29)
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Chain 'E':
    Compound: DNA 6-mer (t6')
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Chain 'F':
    Compound: DNA 6-mer (t6')
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Chain 'G':
    Compound: Putative transposase
    Species: Helicobacter pylori [TaxId:210]
    Gene: BB387_02765, BB390_06935, BB392_05440, BB394_07800, BB413_07925, BB437_07715, BB438_04880, BB447_07970, BB453_04885, BB461_01775, BB469_00740, BFR58_04045, BFR58_04080, BFR58_04135, BFR58_07690, BFR58_08055, BGL67_05025, BGL76_01750, BGL76_01790, BGL76_01830, BGL76_03945, BGL76_04370, BGL76_05875, BGL76_06710, BGL85_00790
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Putative transposase
    Species: Helicobacter pylori [TaxId:210]
    Gene: BB387_02765, BB390_06935, BB392_05440, BB394_07800, BB413_07925, BB437_07715, BB438_04880, BB447_07970, BB453_04885, BB461_01775, BB469_00740, BFR58_04045, BFR58_04080, BFR58_04135, BFR58_07690, BFR58_08055, BGL67_05025, BGL76_01750, BGL76_01790, BGL76_01830, BGL76_03945, BGL76_04370, BGL76_05875, BGL76_06710, BGL85_00790
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA 29-mer (le29)
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Chain 'J':
    Compound: DNA 29-mer (le29)
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Chain 'K':
    Compound: DNA 6-mer (t6')
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Chain 'L':
    Compound: DNA 6-mer (t6')
    Species: HELICOBACTER PYLORI, synthetic [TaxId:210]
  • Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fi8A (A:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal

    Sequence, based on observed residues (ATOM records):
    >6fi8A (A:)
lyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdhi
hiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvvk
qyienqq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fi8B (B:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal

    Sequence, based on observed residues (ATOM records):
    >6fi8B (B:)
lyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdhi
hiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvvk
qyienqqn

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6fi8G (G:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal

    Sequence, based on observed residues (ATOM records):
    >6fi8G (G:)
lyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdhi
hiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvvk
qyienqqn

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6fi8H (H:)
gsamasnavlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveii
emqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistv
ggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal

    Sequence, based on observed residues (ATOM records):
    >6fi8H (H:)
lyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdhi
hiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvvk
qyien

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.