PDB entry 6ffy

View 6ffy on RCSB PDB site
Description: structure of the mouse sorcs2-ngf complex
Deposited on 2018-01-09, released 2018-08-01
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VPS10 domain-containing receptor SorCS2
    Species: Mus musculus [TaxId:10090]
    Gene: Sorcs2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9EPR5
      • conflict (137)
  • Chain 'B':
    Compound: Beta-nerve growth factor
    Species: Mus musculus [TaxId:10090]
    Gene: Ngf, Ngfb
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Beta-nerve growth factor
    Species: Mus musculus [TaxId:10090]
    Gene: Ngf, Ngfb
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ffyA (A:)
garavpvagaasasraqvslistsfvlkgdathnqamvhwtgenssvililtkyyhadmg
kvlesslwrssdfgttytkltlqpgvttvidnfyicpankrkiilvssslgdreqslfls
tdegatfqkypvpflvetllfhpkeedkvlaytkdsklyvssdlgkkwtllqervtkdhv
fwavsgvdddpnlvhveaqdlsggyryytcliyncsaqphiapfsgpidrgsltvqdeyi
flkatstnrtkyyvsyrrsdfvlmklpkyalpkdlqiistdeqqvfvavqewnqvdtynl
yqsdlrgvryslvlenvrssrqaeenvvidilevrgvkgvflanqkvdgkvttvitynkg
rdwdylrppstdmngkptncqppdcylhlhlrwadnpyvsgtvhtkdtapglimgagnlg
sqlveykeemyitsdcghtwrqvfeeehhvlyldhggviaaikdtsiplkilkfsvdegh
twsthnftstsvfvdgllsepgdetlvmtvfghisfrsdwelvkvdfrpsfprqcgeddy
sswdltdlqgdhcimgqqrsyrkrkstswcvkgrsftsaltsrvckcrdsdflcdygfer
ssssestankcsanfwfnplsppedcvlgqtytsslgyrkvvsnvceggvdlqqspvqlq
cplqaprglqvsirgeavavrpredvlfvvrqeqgdvlttkyqvdlgdgfkamyvnltlt
gepirhhyespgiyrvsvraenmaghdeavlfvqvnsplqalylevvpvigvnqevnlta
vllplnpnltvfywwighslqpllsldnsvttkftdagdvrvtvqaacgnsvlqdsrlvr
vldqfqvvplrfsreldtfnpntpewredvglvvtrllsketsipeellvtvvkpglpti
adlyvllplprptrkrsltsdkrlaavqqalnshrisfilrgglrilvelrdtdtgpqrp
ggsaaahhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ffyA (A:)
qvslistsfvlkgdathnqamvhwtgenssvililtkyyhadmgkvlesslwrssdfgtt
ytkltlqpgvttvidnfyicpakiilvssslgdreqslflstdegatfqkypvpflvetl
lfhpkeedkvlaytkdsklyvssdlgkkwtllqervtkdhvfwavsgvdddpnlvhveaq
dlsggyryytcliynchiapfsgpidrgsltvqdeyiflkatstnrtkyyvsyrrsdfvl
mklpkyalpkdlqiistdeqqvfvavqewnqvdtynlyqsdlrgvryslvlenvrssrqa
eenvvidilevrgvkgvflanqkvdgkvttvitynkgrdwdylrppstdmngkptncqpp
dcylhlhlrwadnpyvsgtvhtkdtapglimgagnlgsqlveykeemyitsdcghtwrqv
feeehhvlyldhggviaaikdtsiplkilkfsvdeghtwsthnftstsvfvdgllsepgd
etlvmtvfghisfrsdwelvkvdfrpsfprqcgeddysswdltdlqgdhcimgqqrsyrk
rkstswcvkgrsftsaltsrvckcrdsdflcdygferssssestankcsanfwfnplspp
edcvlgqtytsslgyrkvvsnvceggvdlqqspvqlqcplqaprglqvsirgeavavrpr
edvlfvvrqeqgdvlttkyqvdlgdgfkamyvnltltgepirhhyespgiyrvsvraenm
aghdeavlfvqvnsplqalylevvpvigvnqevnltavllnpnltvfywwighslqplls
ldnsvttkftdagdvrvtvqaacgnsvlqdsrlvrvldqfqvvplrfsreldtfnpntpe
wredvglvvtrllsketsipeellvtvvkpglptiadlyvllpltsdkrlaavqqalnsh
risfilrgglrilvelrd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ffyB (B:)
ssthpvfhmgefsvcdsvsvwvgdkttatdikgkevtvlaevninnsvfrqyffetkcra
snpvesgcrgidskhwnsycttthtfvkalttdekqaawrfiridtacvcvlsrkataag
aaahhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ffyB (B:)
hmgefsvcdsvsvwvgdkttatdikgkevtvlaevninnsvfrqyffetkcrasnpvesg
crgidskhwnsycttthtfvkalttdekqaawrfiridtacvcvlsrkat

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ffyC (C:)
ssthpvfhmgefsvcdsvsvwvgdkttatdikgkevtvlaevninnsvfrqyffetkcra
snpvesgcrgidskhwnsycttthtfvkalttdekqaawrfiridtacvcvlsrkataag
aaahhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ffyC (C:)
fhmgefsvcdsvsvwvgdkttatdikgkevtvlaevninnsvfrqyffetkcrasnpves
gcrgidskhwnsycttthtfvkalttdekqaawrfiridtacvcvlsrkat