PDB entry 6fe8

View 6fe8 on RCSB PDB site
Description: cryo-em structure of the core centromere binding factor 3 complex
Deposited on 2017-12-30, released 2018-08-01
The last revision was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: EM
Resolution: 3.7 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Centromere DNA-binding protein complex CBF3 subunit B
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: CEP3, CBF3, CBF3B, CSL1, YMR168C, YM8520.17C
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Centromere DNA-binding protein complex CBF3 subunit B
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: CEP3, CBF3, CBF3B, CSL1, YMR168C, YM8520.17C
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Suppressor of kinetochore protein 1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SKP1, CBF3D, YDR328C, D9798.14
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Centromere DNA-binding protein complex CBF3 subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: CTF13, CBF3C, YMR094W, YM6543.01, YM9582.19
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35203 (Start-478)
      • expression tag (479-482)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fe8A (A:)
mggsshhhhhhssglvprgshmklitassskeylpdlllfwqnyeywitniglyktkqrd
ltrtpanldtdteecmfwmnylqkdqsfqlmnfamenlgalyfgsigdiselylrveqyw
drradknhsvdgkywdaliwsvftmciyympveklaeifsvyplheylgsnkrlnwedgm
qlvmcqnfarcslfqlkqcdfmahpdirlvqaylilatttfpydepllanslltqcihtf
knfhvddfrpllnddpvesiakvtlgrifyrlcgcdylqsgprkpialhtevssllqhaa
ylqdlpnvdvyreenstevlywkiisldrdldqylnksskpplktldairreldifqykv
dsleedfrsnnsrfqkfialfqistvswklfkmyliyydtadsllkvihyskviislivn
nfhakseffnrhpmvmqtitrvvsfisfyqifvesaavkqllvdlteltanlptifgskl
dklvylterlsklkllwdkvqlldsgdsfyhpvfkilqndikiielkndemfslikglgs
lvplnklrqeslleeedenntepsdfrtiveefqseynisdils

    Sequence, based on observed residues (ATOM records):
    >6fe8A (A:)
skeylpdlllfwqnyeywitniglyktkqrdltrtpanldtdteecmfwmnylqkdqsfq
lmnfamenlgalyfgsigdiselylrveqywdrradknhsvdgkywdaliwsvftmciyy
mpveklaeifsvyplheylgsnkrlnwedgmqlvmcqnfarcslfqlkqcdfmahpdirl
vqaylilatttfpydepllanslltqcihtfknfhvddfrpllnddpvesiakvtlgrif
yrlcgcdylqsgprkpialhtevssllpnvdvyreenstevlywkiisldrdldqylnks
skpplktldairreldifqykvdsleedfrsnnsrfqkfialfqistvswklfkmyliyy
dtadsllkvihyskviislivnnfhakseffnrhpmvmqtitrvvsfisfyqifvesaav
kqllvdlteltanlptifgskldklvylterlsklkllwdkvqlldsgdsfyhpvfkilq
ndikiielkndemfslikglgslsdfrtiveefqseynisdils

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fe8B (B:)
mggsshhhhhhssglvprgshmklitassskeylpdlllfwqnyeywitniglyktkqrd
ltrtpanldtdteecmfwmnylqkdqsfqlmnfamenlgalyfgsigdiselylrveqyw
drradknhsvdgkywdaliwsvftmciyympveklaeifsvyplheylgsnkrlnwedgm
qlvmcqnfarcslfqlkqcdfmahpdirlvqaylilatttfpydepllanslltqcihtf
knfhvddfrpllnddpvesiakvtlgrifyrlcgcdylqsgprkpialhtevssllqhaa
ylqdlpnvdvyreenstevlywkiisldrdldqylnksskpplktldairreldifqykv
dsleedfrsnnsrfqkfialfqistvswklfkmyliyydtadsllkvihyskviislivn
nfhakseffnrhpmvmqtitrvvsfisfyqifvesaavkqllvdlteltanlptifgskl
dklvylterlsklkllwdkvqlldsgdsfyhpvfkilqndikiielkndemfslikglgs
lvplnklrqeslleeedenntepsdfrtiveefqseynisdils

    Sequence, based on observed residues (ATOM records):
    >6fe8B (B:)
skeylpdlllfwqnyeywitniglyktkqrdltrtpanldtdteecmfwmnylqkdqsfq
lmnfamenlgalyfgsigdiselylrveqywdrradknhsvdgkywdaliwsvftmciyy
mpveklaeifsvyplheylgsnkrlnwedgmqlvmcqnfarcslfqlkqcdfmahpdirl
vqaylilatttfpydepllanslltqcihtfknfhvddfrpllnddpvesiakvtlgrif
yrlcgcdylqsgprkpialhtevsnstevlywkiisldrdldqylnksskpplktldair
reldifqykvdsleedfrsnnsrfqkfialfqistvswklfkmyliyydtadsllkvihy
skviislivnnfhakseffnrhpmvmqtitrvvsfisfyqifvesaavkqllvdltelta
nlptifgskldklvylterlsklkllwdkvqlldsgdsfyhpvfkilqndikiielknde
mfslikglgslsdfrtiveefqseynisdils

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6fe8C (C:)
mgvtsnvvlvsgegerftvdkkiaerslllknylndmhdsnlqnnsdsesdsdsetnhks
kdnnngddddedddeivmpvpnvrssvlqkviewaehhrdsnfpdeddddsrksapvdsw
dreflkvdqemlyeiilaanylnikplldagckvvaemirgrspeeirrtfnivndftpe
eeaairrenewaedrgs

    Sequence, based on observed residues (ATOM records):
    >6fe8C (C:)
snvvlvsgegerftvdkkiaerslllknylndmhdivmpvpnvrssvlqkviewaehhrd
snfpdeddddsrksapvdswdreflkvdqemlyeiilaanylnikplldagckvvaemir
grspeeirrtfnivndftpeeeaairrene

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6fe8D (D:)
mgpsfnpvrflelpidirkevyfhldgnfcgahpypidilyksndvelpgkpsykrskrs
kkllrymypvfatylnifeyspqliekwleyafwlrydclvldcfkvnhlydgtlidale
wtyldnelrlayfnkasmlevwytfkeykkwvidsvafdeldllnvsniqfnidnltpql
vdkclsileqkdlfatigevqfgqdeevgeekdvdvsgansdensspsstiknkkrsask
rshsdngnvgathnqltsisvirtirsmesmkslrkitvrgeklyellinfhgfrdnpgk
tisyivkrrineirlsrmnqisrtgladftrwdnlqklvlsrvayidlnsivfpknfksl
tmkrvskikwwnieenilkelkvdkrtfkslyikeddskftkffnlrhtrikeldksein
qitylrcqaivwlsfrtlnhiklqnvsevfnniivpralfdskrveiyrcekisqvlvig
srsgsenlyfqgskrrwkknfiavsaanrfkkisssgal

    Sequence, based on observed residues (ATOM records):
    >6fe8D (D:)
fnpvrflelpidirkevyfhldgnfcgleyafwlrydclvldcfkvnhlydgtlidalew
tyldnelrlayfnkasmlevwytfkeykkwvidsvanvsniqfnidnltpqlvdkclsil
eqkdlfatigevqfgsisvirtirsmesmkslrkitvrgeklyellinfhgfrdnpgkti
syivkrrineirlsrmnqisrtgladftrwdnlqklvlsrvayidlnsivfpknfksltm
krvskikwwnieenilkelkvdkrtfkslyikeddskftkffnlrhtrikeldkseinqi
tylrcqaivwlsfrtlnhiklqnvsevfnniivpralfdskrveiyrcekisqvlvigsr
s