PDB entry 6fdq

View 6fdq on RCSB PDB site
Description: structure of chlamydia trachomatis effector protein cdu1 bound to compound 5
Deposited on 2017-12-26, released 2018-08-15
The last revision was dated 2018-10-17, with a file datestamp of 2018-10-12.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Deubiquitinase and deneddylase Dub1
    Species: Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) [TaxId:471472]
    Gene: cdu1, CTL0247
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Deubiquitinase and deneddylase Dub1
    Species: Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) [TaxId:471472]
    Gene: cdu1, CTL0247
    Database cross-references and differences (RAF-indexed):
  • Heterogens: 2UQ, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fdqA (A:)
mkhhhhhhsaglevlfqgprrqtiealvpawdsdiifkclcyfhtlypglipletfppat
ifnfkqkiisiledkkavlrgepikgplpiccskenyrrhlqrttllpvfmwyhptpktl
sdtmqtmkqlaikgsvgashwllvivdiqarrlvyfdslynyvmppenmkkelqsfaqql
dqvypaydskkfsvkiaakeviqrgsgsscgawccqflhwylkdpltdalndlpvdsver
henlasfvqaceaavqdlpelswpea

    Sequence, based on observed residues (ATOM records):
    >6fdqA (A:)
vpawdsdiifkclcyfhtlypglipletfppatifnfkqkiisiledkkavlrgepikgp
lpiccskenyrrhlqrttllpvfmwyhptpktlsdtmqtmkqlaikgsvgashwllvivd
iqarrlvyfdslynyvmppenmkkelqsfaqqldqvypaydskkfsvkiaakeviqrgsg
sscgawccqflhwylkdpltdalndlpvdsverhenlasfvqaceaavqdlpelswpea

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fdqB (B:)
mkhhhhhhsaglevlfqgprrqtiealvpawdsdiifkclcyfhtlypglipletfppat
ifnfkqkiisiledkkavlrgepikgplpiccskenyrrhlqrttllpvfmwyhptpktl
sdtmqtmkqlaikgsvgashwllvivdiqarrlvyfdslynyvmppenmkkelqsfaqql
dqvypaydskkfsvkiaakeviqrgsgsscgawccqflhwylkdpltdalndlpvdsver
henlasfvqaceaavqdlpelswpea

    Sequence, based on observed residues (ATOM records):
    >6fdqB (B:)
rrqtiealvpawdsdiifkclcyfhtlypglipletfppatifnfkqkiisiledkkavl
rgepikgplpiccskenyrrhlqrttllpvfmwyhptpktlsdtmqtmkqlaikgsvgas
hwllvivdiqarrlvyfdslynyvmppenmkkelqsfaqqldqvypaydskkfsvkiaak
eviqrgsgsscgawccqflhwylkdpltdalndlpvdsverhenlasfvqaceaavqdlp
elswpea