PDB entry 6fdk

View 6fdk on RCSB PDB site
Description: Structure of Chlamydia trachomatis effector protein Cdu1 bound to ubiquitin
Class: hydrolase
Keywords: ChlaDUB1, CE protease, DUB, Ubiquitin., HYDROLASE
Deposited on 2017-12-25, released 2018-08-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-10-17, with a file datestamp of 2018-10-12.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Deubiquitinase and deneddylase Dub1
    Species: Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) [TaxId:471472]
    Gene: cdu1, CTL0247
    Database cross-references and differences (RAF-indexed):
    • Uniprot B0B9A0 (Start-265)
      • engineered mutation (38)
      • engineered mutation (90)
      • engineered mutation (250)
  • Chain 'B':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6fdkb_
  • Heterogens: CL, AYE, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6fdkB (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6fdkB (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrg