PDB entry 6fdf

View 6fdf on RCSB PDB site
Description: Crystal structure of S. pombe Dnmt2 methyltransferase
Class: transferase
Keywords: Dnmt2, Methyltransferase, S-adenosylhomocysteine, tRNA, TRANSFERASE
Deposited on 2017-12-22, released 2018-06-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-06-20, with a file datestamp of 2018-06-15.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (cytosine(38)-C(5))-methyltransferase
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: pmt1, SPBC19C2.02
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6fdfa_
  • Chain 'B':
    Compound: tRNA (cytosine(38)-C(5))-methyltransferase
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: pmt1, SPBC19C2.02
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6fdfb_
  • Chain 'C':
    Compound: tRNA (cytosine(38)-C(5))-methyltransferase
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: pmt1, SPBC19C2.02
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6fdfc_
  • Chain 'D':
    Compound: tRNA (cytosine(38)-C(5))-methyltransferase
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: pmt1, SPBC19C2.02
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6fdfd_
  • Heterogens: SAH, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6fdfA (A:)
gplgslstkrlrvlelysgiggmhyalnlanipadivcaidinpqaneiynlnhgklakh
mdistltakdfdafdcklwtmspscqpftrignrkdildprsqaflnilnvlphvnnlpe
yilienvqgfeeskaaeecrkvlrncgynliegilspnqfnipnsrsrwyglarlnfkge
wsiddvfqfsevaqkegevkrirdyleierdwssymvlesvlnkwghqfdivkpdssscc
cftrgythlvqgagsilqmsdhentheqfernrmalqlryftarevarlmgfpeslewsk
snvtekcmyrllgnsinvkvvsylisllleplnf

    Sequence, based on observed residues (ATOM records): (download) 
    >6fdfA (A:)
rlrvlelysgiggmhyalnlanipadivcaidinpqaneiynlnhgklakhmdistltak
dfdafdcklwtmspscqpftrignrkdildprsqaflnilnvlphvnnlpeyilienvqg
feeskaaeecrkvlrncgynliegilspnqfnipnsrsrwyglarlnfkgewsiddvfqf
sevaqkegevkrirdyleierdwssymvlesvlnkwghqfdivkpdssscccftrgythl
vqgagsilqmsdhentheqfernrmalqlryftarevarlmgfpeslewsksnvtekcmy
rllgnsinvkvvsylisllleplnf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6fdfB (B:)
gplgslstkrlrvlelysgiggmhyalnlanipadivcaidinpqaneiynlnhgklakh
mdistltakdfdafdcklwtmspscqpftrignrkdildprsqaflnilnvlphvnnlpe
yilienvqgfeeskaaeecrkvlrncgynliegilspnqfnipnsrsrwyglarlnfkge
wsiddvfqfsevaqkegevkrirdyleierdwssymvlesvlnkwghqfdivkpdssscc
cftrgythlvqgagsilqmsdhentheqfernrmalqlryftarevarlmgfpeslewsk
snvtekcmyrllgnsinvkvvsylisllleplnf

    Sequence, based on observed residues (ATOM records): (download) 
    >6fdfB (B:)
krlrvlelysgiggmhyalnlanipadivcaidinpqaneiynlnhgklakhmdistlta
kdfdafdcklwtmspscqpftriprsqaflnilnvlphvnnlpeyilienvqgfeeskaa
eecrkvlrncgynliegilspnqfnipnsrsrwyglarlnfkgewsiddvfqfsevaqke
gevkrirdyleierdwssymvlesvlnkwghqfdivkpdssscccftrgythlvqgagsi
lqmsdhentheqfernrmalqlryftarevarlmgfpeslewsksnvtekcmyrllgnsi
nvkvvsylisllleplnf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6fdfC (C:)
gplgslstkrlrvlelysgiggmhyalnlanipadivcaidinpqaneiynlnhgklakh
mdistltakdfdafdcklwtmspscqpftrignrkdildprsqaflnilnvlphvnnlpe
yilienvqgfeeskaaeecrkvlrncgynliegilspnqfnipnsrsrwyglarlnfkge
wsiddvfqfsevaqkegevkrirdyleierdwssymvlesvlnkwghqfdivkpdssscc
cftrgythlvqgagsilqmsdhentheqfernrmalqlryftarevarlmgfpeslewsk
snvtekcmyrllgnsinvkvvsylisllleplnf

    Sequence, based on observed residues (ATOM records): (download) 
    >6fdfC (C:)
rlrvlelysgiggmhyalnlanipadivcaidinpqaneiynlnhgklakhmdistltak
dfdafdcklwtmspscqpprsqaflnilnvlphvnnlpeyilienvqgfeeskaaeecrk
vlrncgynliegilspnqfnipnsrsrwyglarlnfkgewsiddvfqfsevaqkegevkr
irdyleierdwssymvlesvlnkwghqfdivkpdssscccftrgythlvqgagsilqmsd
hentheqfernrmalqlryftarevarlmgfpeslewsksnvtekcmyrllgnsinvkvv
sylisllleplnf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6fdfD (D:)
gplgslstkrlrvlelysgiggmhyalnlanipadivcaidinpqaneiynlnhgklakh
mdistltakdfdafdcklwtmspscqpftrignrkdildprsqaflnilnvlphvnnlpe
yilienvqgfeeskaaeecrkvlrncgynliegilspnqfnipnsrsrwyglarlnfkge
wsiddvfqfsevaqkegevkrirdyleierdwssymvlesvlnkwghqfdivkpdssscc
cftrgythlvqgagsilqmsdhentheqfernrmalqlryftarevarlmgfpeslewsk
snvtekcmyrllgnsinvkvvsylisllleplnf

    Sequence, based on observed residues (ATOM records): (download) 
    >6fdfD (D:)
rlrvlelysgiggmhyalnlanipadivcaidinpqaneiynlnhgklakhmdistltak
dfdafdcklwtmspscqpftdprsqaflnilnvlphvnnlpeyilienvqgfeeskaaee
crkvlrncgynliegilspnqfnipnsrsrwyglarlnfkgewsiddvfqfsevegevkr
irdyleierdwssymvlesvlnkwghqfdivkpdssscccftrgythlvqgagsilqmsd
hentheqfernrmalqlryftarevarlmgfpeslewsksnvtekcmyrllgnsinvkvv
sylisllleplnf