PDB entry 6fdb

View 6fdb on RCSB PDB site
Description: positively supercharged variant of the computationally designed cage protein o3-33
Deposited on 2017-12-22, released 2018-08-22
The last revision was dated 2018-08-29, with a file datestamp of 2018-08-24.
Experiment type: XRAY
Resolution: 3.62 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Propanediol utilization protein
    Species: Salmonella choleraesuis [TaxId:28901]
    Gene: A7S24_10320, A7S72_11360, BUJ19_10850, CBI64_04620, CEP91_14370, IN36_13565, IN77_10790, IN95_23850, NGUA18_00608
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0M0QF47 (Start-183)
      • engineered mutation (10)
      • engineered mutation (14)
      • engineered mutation (37-38)
      • engineered mutation (65-66)
      • engineered mutation (102)
      • engineered mutation (129)
      • engineered mutation (147-148)
      • engineered mutation (155)
      • engineered mutation (159-160)
      • engineered mutation (162)
      • engineered mutation (166)
      • engineered mutation (168)
      • expression tag (184)
  • Chain 'B':
    Compound: Propanediol utilization protein
    Species: Salmonella choleraesuis [TaxId:28901]
    Gene: A7S24_10320, A7S72_11360, BUJ19_10850, CBI64_04620, CEP91_14370, IN36_13565, IN77_10790, IN95_23850, NGUA18_00608
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0M0QF47 (Start-183)
      • engineered mutation (10)
      • engineered mutation (14)
      • engineered mutation (37-38)
      • engineered mutation (65-66)
      • engineered mutation (102)
      • engineered mutation (129)
      • engineered mutation (147-148)
      • engineered mutation (155)
      • engineered mutation (159-160)
      • engineered mutation (162)
      • engineered mutation (166)
      • engineered mutation (168)
      • expression tag (184)
  • Chain 'C':
    Compound: Propanediol utilization protein
    Species: Salmonella choleraesuis [TaxId:28901]
    Gene: A7S24_10320, A7S72_11360, BUJ19_10850, CBI64_04620, CEP91_14370, IN36_13565, IN77_10790, IN95_23850, NGUA18_00608
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0M0QF47 (Start-183)
      • engineered mutation (10)
      • engineered mutation (14)
      • engineered mutation (37-38)
      • engineered mutation (65-66)
      • engineered mutation (102)
      • engineered mutation (129)
      • engineered mutation (147-148)
      • engineered mutation (155)
      • engineered mutation (159-160)
      • engineered mutation (162)
      • engineered mutation (166)
      • engineered mutation (168)
      • expression tag (184)
  • Chain 'D':
    Compound: Propanediol utilization protein
    Species: Salmonella choleraesuis [TaxId:28901]
    Gene: A7S24_10320, A7S72_11360, BUJ19_10850, CBI64_04620, CEP91_14370, IN36_13565, IN77_10790, IN95_23850, NGUA18_00608
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0M0QF47 (Start-183)
      • engineered mutation (10)
      • engineered mutation (14)
      • engineered mutation (37-38)
      • engineered mutation (65-66)
      • engineered mutation (102)
      • engineered mutation (129)
      • engineered mutation (147-148)
      • engineered mutation (155)
      • engineered mutation (159-160)
      • engineered mutation (162)
      • engineered mutation (166)
      • engineered mutation (168)
      • expression tag (184)
  • Chain 'E':
    Compound: Propanediol utilization protein
    Species: Salmonella choleraesuis [TaxId:28901]
    Gene: A7S24_10320, A7S72_11360, BUJ19_10850, CBI64_04620, CEP91_14370, IN36_13565, IN77_10790, IN95_23850, NGUA18_00608
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0M0QF47 (Start-183)
      • engineered mutation (10)
      • engineered mutation (14)
      • engineered mutation (37-38)
      • engineered mutation (65-66)
      • engineered mutation (102)
      • engineered mutation (129)
      • engineered mutation (147-148)
      • engineered mutation (155)
      • engineered mutation (159-160)
      • engineered mutation (162)
      • engineered mutation (166)
      • engineered mutation (168)
      • expression tag (184)
  • Chain 'F':
    Compound: Propanediol utilization protein
    Species: Salmonella choleraesuis [TaxId:28901]
    Gene: A7S24_10320, A7S72_11360, BUJ19_10850, CBI64_04620, CEP91_14370, IN36_13565, IN77_10790, IN95_23850, NGUA18_00608
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0M0QF47 (Start-183)
      • engineered mutation (10)
      • engineered mutation (14)
      • engineered mutation (37-38)
      • engineered mutation (65-66)
      • engineered mutation (102)
      • engineered mutation (129)
      • engineered mutation (147-148)
      • engineered mutation (155)
      • engineered mutation (159-160)
      • engineered mutation (162)
      • engineered mutation (166)
      • engineered mutation (168)
      • expression tag (184)
  • Chain 'G':
    Compound: Propanediol utilization protein
    Species: Salmonella choleraesuis [TaxId:28901]
    Gene: A7S24_10320, A7S72_11360, BUJ19_10850, CBI64_04620, CEP91_14370, IN36_13565, IN77_10790, IN95_23850, NGUA18_00608
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0M0QF47 (Start-183)
      • engineered mutation (10)
      • engineered mutation (14)
      • engineered mutation (37-38)
      • engineered mutation (65-66)
      • engineered mutation (102)
      • engineered mutation (129)
      • engineered mutation (147-148)
      • engineered mutation (155)
      • engineered mutation (159-160)
      • engineered mutation (162)
      • engineered mutation (166)
      • engineered mutation (168)
      • expression tag (184)
  • Chain 'H':
    Compound: Propanediol utilization protein
    Species: Salmonella choleraesuis [TaxId:28901]
    Gene: A7S24_10320, A7S72_11360, BUJ19_10850, CBI64_04620, CEP91_14370, IN36_13565, IN77_10790, IN95_23850, NGUA18_00608
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0M0QF47 (Start-183)
      • engineered mutation (10)
      • engineered mutation (14)
      • engineered mutation (37-38)
      • engineered mutation (65-66)
      • engineered mutation (102)
      • engineered mutation (129)
      • engineered mutation (147-148)
      • engineered mutation (155)
      • engineered mutation (159-160)
      • engineered mutation (162)
      • engineered mutation (166)
      • engineered mutation (168)
      • expression tag (184)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fdbA (A:)
msqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietg
tsqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsn
vtlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrq
mveglehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6fdbA (A:)
sqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietgt
sqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsnv
tlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrqm
vegl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fdbB (B:)
msqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietg
tsqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsn
vtlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrq
mveglehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6fdbB (B:)
sqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietgt
sqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsnv
tlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrqm
vegl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6fdbC (C:)
msqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietg
tsqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsn
vtlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrq
mveglehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6fdbC (C:)
sqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietgt
sqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsnv
tlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrqm
vegl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6fdbD (D:)
msqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietg
tsqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsn
vtlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrq
mveglehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6fdbD (D:)
sqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietgt
sqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsnv
tlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrqm
vegl

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6fdbE (E:)
msqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietg
tsqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsn
vtlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrq
mveglehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6fdbE (E:)
sqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietgt
sqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsnv
tlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrqm
vegl

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6fdbF (F:)
msqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietg
tsqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsn
vtlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrq
mveglehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6fdbF (F:)
sqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietgt
sqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsnv
tlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrqm
vegl

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6fdbG (G:)
msqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietg
tsqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsn
vtlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrq
mveglehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6fdbG (G:)
sqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietgt
sqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsnv
tlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrqm
vegl

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6fdbH (H:)
msqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietg
tsqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsn
vtlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrq
mveglehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6fdbH (H:)
sqaigilelrsiaagmelgdamlksanvdllvsktisrgkfllmlggdigaiqqaietgt
sqagrllvdslvlanihpsvlpaisglnsvdkrqavgivetrsvaacisaadravkgsnv
tlvrvhmargiggkcymvvagdvsdvalavtvasssagaygrlvyasliprpheamwrqm
vegl