PDB entry 6fd2

View 6fd2 on RCSB PDB site
Description: radical sam 1,2-diol dehydratase aprd4 in complex with its substrate paromamine
Deposited on 2017-12-21, released 2018-01-17
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative apramycin biosynthetic oxidoreductase 4
    Species: Streptoalloteichus tenebrarius (strain ATCC 17920 / DSM 40477 / NCIB 11028) [TaxId:1933]
    Gene: aprD4
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Putative apramycin biosynthetic oxidoreductase 4
    Species: Streptoalloteichus tenebrarius (strain ATCC 17920 / DSM 40477 / NCIB 11028) [TaxId:1933]
    Gene: aprD4
    Database cross-references and differences (RAF-indexed):
  • Heterogens: D5E, SF4, MET, 5AD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6fd2A (A:)
mrrmrlgtvllvspktsfgrdlqrtyagglgtvckdedfllppldlmrlagvlredaddi
aiadeevtgvvpsvepgttvichvslpslledaerlatfraqgarcyaytsirspaqwrt
lferggcegvllpesisfaraalagdhtvpglvtpdslldprhhqpafgdlaaeplpard
lvdhtpymfppiartgitsingsfgcpypcrfycpyplsegrkirtypverivaefrqca
elgitaavfrdpvfsfhrdrtlelcqalkaadtgvpwwcetridrldeevvaalvdagcv
gvevgvesgdpdmqatavrkrlnldtvrkfhavarkaglklvflfliglpretrmsirrt
fdfilelgladtefnlsvitpypgtelhqiavdkgwidgsqnaftshnavmhtdelsigd
lerasrfvdelhavckagpaeraefqarvhawstgda

    Sequence, based on observed residues (ATOM records):
    >6fd2A (A:)
mrlgtvllvspktsfgrdlqrtyagglgtvckdedfllppldlmrlagvlredaddiaia
deevtgvvpsvepgttvichvslpslledaerlatfraqgarcyaytsirspaqwrtlfe
rggcegvllpesisfaraalagdhtvpglvtpdslldprhhqpafgdlaaeplpardlvd
htpymfppiartgitsingsfgcpypcrfycpyplsegrkirtypverivaefrqcaelg
itaavfrdpvfsfhrdrtlelcqalkaadtgvpwwcetridrldeevvaalvdagcvgve
vgvesgdpdmqatavrkrlnldtvrkfhavarkaglklvflfliglpretrmsirrtfdf
ilelgladtefnlsvitpypgtelhqiavdkgwidgsqnaftshnavmhtdelsigdler
asrfvdelhavckagpaeraefqarvhawstgda

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6fd2B (B:)
mrrmrlgtvllvspktsfgrdlqrtyagglgtvckdedfllppldlmrlagvlredaddi
aiadeevtgvvpsvepgttvichvslpslledaerlatfraqgarcyaytsirspaqwrt
lferggcegvllpesisfaraalagdhtvpglvtpdslldprhhqpafgdlaaeplpard
lvdhtpymfppiartgitsingsfgcpypcrfycpyplsegrkirtypverivaefrqca
elgitaavfrdpvfsfhrdrtlelcqalkaadtgvpwwcetridrldeevvaalvdagcv
gvevgvesgdpdmqatavrkrlnldtvrkfhavarkaglklvflfliglpretrmsirrt
fdfilelgladtefnlsvitpypgtelhqiavdkgwidgsqnaftshnavmhtdelsigd
lerasrfvdelhavckagpaeraefqarvhawstgda

    Sequence, based on observed residues (ATOM records):
    >6fd2B (B:)
rlgtvllvspktsfgrdlqrtyagglgtvckdedfllppldlmrlagvlredaddiaiad
eevtgvvpsvepgttvichvslpslledaerlatfraqgarcyaytsirspaqwrtlfer
ggcegvllpesisfaraalagdhtvpglvtpdslldprhhqpafgdlaaeplpardlvdh
tpymfppiartgitsingsfgcpypcrfycpyplsegrkirtypverivaefrqcaelgi
taavfrdpvfsfhrdrtlelcqalkaadtgvpwwcetridrldeevvaalvdagcvgvev
gvesgdpdmqatavrkrlnldtvrkfhavarkaglklvflfliglpretrmsirrtfdfi
lelgladtefnlsvitpypgtelhqiavdkgwidgsqnaftshnavmhtdelsigdlera
srfvdelhavckagpaeraefqarvhawstgda