PDB entry 6f9p

View 6f9p on RCSB PDB site
Description: crystal structure of the fe(ii)/alpha-ketoglutarate dependent dioxygenase kdo5 with re(ii)
Deposited on 2017-12-15, released 2018-11-14
The last revision was dated 2018-11-21, with a file datestamp of 2018-11-16.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CL, RE, SO4, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f9pA (A:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6f9pA (A:)
ltleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitri
lsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavps
kpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrn
eervpstlysirshgkmnpvmkklfepiyqcpkdasgptasvlygnrelpfirfdaaeqi
fnenagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqrien
geiikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdld

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f9pB (B:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6f9pB (B:)
eiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitrilsq
fgsdfsaeqygaivfqglievdklnkygficsllhgavpskpvqyyaqrkgggllhavfv
htedaflsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkptasvl
ygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnh
lcahgrsafirqmlrmmsktslihirsvtrtddpyfimeehlgkifdld

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6f9pC (C:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6f9pC (C:)
iptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitrilsqf
gsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavpskpvq
yyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrneerv
pstlysirshgkmnpvmkklfepiyqcpkdnsgptasvlygnrelpfirfdaaeqifnen
agqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqrcerrqml
rmmsktslihirsvtrtddpyfimeehlgkifdld

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6f9pD (D:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6f9pD (D:)
tleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitril
sqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavpsk
pvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrne
ervpstlysirshgkmnpvmkklfepiyqcpkdansgptasvlygnrelpfirfdaaeqi
fnenagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqrcer
rqmlrmmsktslihirsvtrtddpyfimeehlgkifdld