PDB entry 6f9d

View 6f9d on RCSB PDB site
Description: model of the rift valley fever virus glycoprotein hexamer type 2
Deposited on 2017-12-14, released 2018-01-31
The last revision was dated 2018-02-07, with a file datestamp of 2018-02-02.
Experiment type: EM
Resolution: 13.3 Å
R-factor: N/A
AEROSPACI score: -0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A2T072 (3-430)
      • expression tag (0-2)
  • Chain 'C':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A2T072 (3-430)
      • expression tag (0-2)
  • Chain 'E':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A2T072 (3-430)
      • expression tag (0-2)
  • Chain 'G':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A2T072 (3-430)
      • expression tag (0-2)
  • Chain 'I':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A2T072 (3-430)
      • expression tag (0-2)
  • Chain 'K':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A2T072 (3-430)
      • expression tag (0-2)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f9dA (A:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmtgaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcd
gqlstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgqykgkldsgqtkre
lksfdisqcpkigghgskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkk
plcvgyervvvkrels

    Sequence, based on observed residues (ATOM records):
    >6f9dA (A:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcdgq
lstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgelksfdisqcpkiggh
gskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkkplcvgyervvvkrel
s

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6f9dB (B:)
dpgcseliqassrittcstegvntkcrlsgtaliragsvgaeaclmlkgvkedqtkflki
ktvsselscregqsywtgsfspkclssrrchlvgechvnrclswrdnetsaefsfvgest
tmrenkcfeqcggwgcgcfnvnpsclfvhtylqsvrkealrvfncidwvhkltleitdfd
gsvstidlgasssrftnwgsvslsldaegisgsnsfsfiespgkgyaivdepfseiprqg
flgeircnsessvlsahesclrapnlisykpmidqlecttnlidpfvvfergslpqtrnd
ktfaaskgnrgvqafskgsvqadltlmfdnfevdfvgaavscdaaflnltgcyscnagar
vclsitstgtgslsahnkdgslhivlpsengtkdqcqilhftvpeveeefmyscdgderp
llvkgtliaid

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6f9dC (C:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmtgaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcd
gqlstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgqykgkldsgqtkre
lksfdisqcpkigghgskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkk
plcvgyervvvkrels

    Sequence, based on observed residues (ATOM records):
    >6f9dC (C:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcdgq
lstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgelksfdisqcpkiggh
gskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkkplcvgyervvvkrel
s

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6f9dD (D:)
dpgcseliqassrittcstegvntkcrlsgtaliragsvgaeaclmlkgvkedqtkflki
ktvsselscregqsywtgsfspkclssrrchlvgechvnrclswrdnetsaefsfvgest
tmrenkcfeqcggwgcgcfnvnpsclfvhtylqsvrkealrvfncidwvhkltleitdfd
gsvstidlgasssrftnwgsvslsldaegisgsnsfsfiespgkgyaivdepfseiprqg
flgeircnsessvlsahesclrapnlisykpmidqlecttnlidpfvvfergslpqtrnd
ktfaaskgnrgvqafskgsvqadltlmfdnfevdfvgaavscdaaflnltgcyscnagar
vclsitstgtgslsahnkdgslhivlpsengtkdqcqilhftvpeveeefmyscdgderp
llvkgtliaid

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6f9dE (E:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmtgaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcd
gqlstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgqykgkldsgqtkre
lksfdisqcpkigghgskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkk
plcvgyervvvkrels

    Sequence, based on observed residues (ATOM records):
    >6f9dE (E:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcdgq
lstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgelksfdisqcpkiggh
gskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkkplcvgyervvvkrel
s

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6f9dF (F:)
dpgcseliqassrittcstegvntkcrlsgtaliragsvgaeaclmlkgvkedqtkflki
ktvsselscregqsywtgsfspkclssrrchlvgechvnrclswrdnetsaefsfvgest
tmrenkcfeqcggwgcgcfnvnpsclfvhtylqsvrkealrvfncidwvhkltleitdfd
gsvstidlgasssrftnwgsvslsldaegisgsnsfsfiespgkgyaivdepfseiprqg
flgeircnsessvlsahesclrapnlisykpmidqlecttnlidpfvvfergslpqtrnd
ktfaaskgnrgvqafskgsvqadltlmfdnfevdfvgaavscdaaflnltgcyscnagar
vclsitstgtgslsahnkdgslhivlpsengtkdqcqilhftvpeveeefmyscdgderp
llvkgtliaid

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6f9dG (G:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmtgaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcd
gqlstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgqykgkldsgqtkre
lksfdisqcpkigghgskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkk
plcvgyervvvkrels

    Sequence, based on observed residues (ATOM records):
    >6f9dG (G:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcdgq
lstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgelksfdisqcpkiggh
gskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkkplcvgyervvvkrel
s

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6f9dH (H:)
dpgcseliqassrittcstegvntkcrlsgtaliragsvgaeaclmlkgvkedqtkflki
ktvsselscregqsywtgsfspkclssrrchlvgechvnrclswrdnetsaefsfvgest
tmrenkcfeqcggwgcgcfnvnpsclfvhtylqsvrkealrvfncidwvhkltleitdfd
gsvstidlgasssrftnwgsvslsldaegisgsnsfsfiespgkgyaivdepfseiprqg
flgeircnsessvlsahesclrapnlisykpmidqlecttnlidpfvvfergslpqtrnd
ktfaaskgnrgvqafskgsvqadltlmfdnfevdfvgaavscdaaflnltgcyscnagar
vclsitstgtgslsahnkdgslhivlpsengtkdqcqilhftvpeveeefmyscdgderp
llvkgtliaid

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6f9dI (I:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmtgaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcd
gqlstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgqykgkldsgqtkre
lksfdisqcpkigghgskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkk
plcvgyervvvkrels

    Sequence, based on observed residues (ATOM records):
    >6f9dI (I:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcdgq
lstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgelksfdisqcpkiggh
gskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkkplcvgyervvvkrel
s

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6f9dJ (J:)
dpgcseliqassrittcstegvntkcrlsgtaliragsvgaeaclmlkgvkedqtkflki
ktvsselscregqsywtgsfspkclssrrchlvgechvnrclswrdnetsaefsfvgest
tmrenkcfeqcggwgcgcfnvnpsclfvhtylqsvrkealrvfncidwvhkltleitdfd
gsvstidlgasssrftnwgsvslsldaegisgsnsfsfiespgkgyaivdepfseiprqg
flgeircnsessvlsahesclrapnlisykpmidqlecttnlidpfvvfergslpqtrnd
ktfaaskgnrgvqafskgsvqadltlmfdnfevdfvgaavscdaaflnltgcyscnagar
vclsitstgtgslsahnkdgslhivlpsengtkdqcqilhftvpeveeefmyscdgderp
llvkgtliaid

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6f9dK (K:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmtgaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcd
gqlstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgqykgkldsgqtkre
lksfdisqcpkigghgskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkk
plcvgyervvvkrels

    Sequence, based on observed residues (ATOM records):
    >6f9dK (K:)
edphlrnrpgkghnyidgmtqedatckpvtyagacssfdvllekgkfplfqsyahhrtll
eavhdtiiakadppscdlqsahgnpcmkeklvmkthcpndyqsahylnndgkmasvkcpp
kyeltedcnfcrqmaslkkgsyplqdlfcqsseddgsklktkmkgvcevgvqalkkcdgq
lstahevvpfavfknskkvyldkldlkteenllpdsfvcfehkgelksfdisqcpkiggh
gskkctgdaafcsayectaqyanaycshangsgivqiqvsgvwkkplcvgyervvvkrel
s

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6f9dL (L:)
dpgcseliqassrittcstegvntkcrlsgtaliragsvgaeaclmlkgvkedqtkflki
ktvsselscregqsywtgsfspkclssrrchlvgechvnrclswrdnetsaefsfvgest
tmrenkcfeqcggwgcgcfnvnpsclfvhtylqsvrkealrvfncidwvhkltleitdfd
gsvstidlgasssrftnwgsvslsldaegisgsnsfsfiespgkgyaivdepfseiprqg
flgeircnsessvlsahesclrapnlisykpmidqlecttnlidpfvvfergslpqtrnd
ktfaaskgnrgvqafskgsvqadltlmfdnfevdfvgaavscdaaflnltgcyscnagar
vclsitstgtgslsahnkdgslhivlpsengtkdqcqilhftvpeveeefmyscdgderp
llvkgtliaid