PDB entry 6f92

View 6f92 on RCSB PDB site
Description: structure of the family gh92 alpha-mannosidase bt3965 from bacteroides thetaiotaomicron in complex with mannoimidazole (mani)
Deposited on 2017-12-13, released 2018-05-02
The last revision was dated 2018-05-09, with a file datestamp of 2018-05-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: putative alpha-1,2-mannosidase
    Species: Bacteroides thetaiotaomicron [TaxId:818]
    Gene: HMPREF2534_04919
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A139JT15 (Start-755)
      • expression tag (756-763)
  • Chain 'B':
    Compound: putative alpha-1,2-mannosidase
    Species: Bacteroides thetaiotaomicron [TaxId:818]
    Gene: HMPREF2534_04919
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: putative alpha-1,2-mannosidase
    Species: Bacteroides thetaiotaomicron [TaxId:818]
    Gene: HMPREF2534_04919
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: putative alpha-1,2-mannosidase
    Species: Bacteroides thetaiotaomicron [TaxId:818]
    Gene: HMPREF2534_04919
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A139JT15 (Start-755)
      • expression tag (756-763)
  • Heterogens: MVL, NA, CA, CL, EDO, NO3, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f92A (A:)
maqtekltdyvnpfvgtdgygnvypgaqipfggiqispdtdsrfydaasgykynhltlmg
fslthlsgtgipdlgdflfipgtgemklepgthedpdqgyrsryshdkewaspnyyavel
adygvkaemtsgvrsgmfrftypesdnafimidmnhtlwqscewsnlrmindstitgykl
vkgwgperhvyftatfskkltglrfvqdkkpviyntsrfrssyeawgknlmacisfdtka
geevtvktaisavstdgarnnmkeldgltfnelrakgealwekelgkytltadrktketf
ytsayhaalhpfifqdsdgqfrgldkniekaegftnytvfslwdtyralhpwfnlvqqev
nadiansmlahydksvekmlpiwsfygnetwcmigyhavsvladmivkevkgfdyeraye
amkttamnsnydclpeyremgyvpfdkeaesvsktleyayddyciaqaakklgkeddyhy
flnralsyqtlidpetkymrgrdskgdwrtpftpvayqgpgsvhgwgditegftmqytwy
vpqdvqgyineagkelfrkrldelftvelpddipgahdiqgrigaywhgnepchhvayly
nylkepwkcqkwirtivdrfygntpdalsgnddcgqmsawymfncigfypvapssniyni
gspcaeaitvrmsngkniemtadnwspknlyvkelyvngkkydksyltyddirdgvklrf
vmsgkpnykravsdeavppsislpektmkykssigflehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6f92A (A:)
ekltdyvnpfvgtdgygnvypgaqipfggiqispdtdsrfydaasgykynhltlmgfslt
hlsgtgipdlgdflfipgtgemklepgthedpdqgyrsryshdkewaspnyyaveladyg
vkaemtsgvrsgmfrftypesdnafimidmnhtlwqscewsnlrmindstitgyklvkgw
gperhvyftatfskkltglrfvqdkkpviyntsrfrssyeawgknlmacisfdtkageev
tvktaisavstdgarnnmkeldgltfnelrakgealwekelgkytltadrktketfytsa
yhaalhpfifqdsdgqfrgldkniekaegftnytvfslwdtyralhpwfnlvqqevnadi
ansmlahydksvekmlpiwsfygnetwcmigyhavsvladmivkevkgfdyerayeamkt
tamnsnydclpeyremgyvpfdkeaesvsktleyayddyciaqaakklgkeddyhyflnr
alsyqtlidpetkymrgrdskgdwrtpftpvayqgpgsvhgwgditegftmqytwyvpqd
vqgyineagkelfrkrldelftvelpddipgahdiqgrigaywhgnepchhvaylynylk
epwkcqkwirtivdrfygntpdalsgnddcgqmsawymfncigfypvapssniynigspc
aeaitvrmsngkniemtadnwspknlyvkelyvngkkydksyltyddirdgvklrfvmsg
kpnykravsdeavppsislpektmkykssigflehhhhhh

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f92B (B:)
maqtekltdyvnpfvgtdgygnvypgaqipfggiqispdtdsrfydaasgykynhltlmg
fslthlsgtgipdlgdflfipgtgemklepgthedpdqgyrsryshdkewaspnyyavel
adygvkaemtsgvrsgmfrftypesdnafimidmnhtlwqscewsnlrmindstitgykl
vkgwgperhvyftatfskkltglrfvqdkkpviyntsrfrssyeawgknlmacisfdtka
geevtvktaisavstdgarnnmkeldgltfnelrakgealwekelgkytltadrktketf
ytsayhaalhpfifqdsdgqfrgldkniekaegftnytvfslwdtyralhpwfnlvqqev
nadiansmlahydksvekmlpiwsfygnetwcmigyhavsvladmivkevkgfdyeraye
amkttamnsnydclpeyremgyvpfdkeaesvsktleyayddyciaqaakklgkeddyhy
flnralsyqtlidpetkymrgrdskgdwrtpftpvayqgpgsvhgwgditegftmqytwy
vpqdvqgyineagkelfrkrldelftvelpddipgahdiqgrigaywhgnepchhvayly
nylkepwkcqkwirtivdrfygntpdalsgnddcgqmsawymfncigfypvapssniyni
gspcaeaitvrmsngkniemtadnwspknlyvkelyvngkkydksyltyddirdgvklrf
vmsgkpnykravsdeavppsislpektmkykssigflehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6f92B (B:)
ekltdyvnpfvgtdgygnvypgaqipfggiqispdtdsrfydaasgykynhltlmgfslt
hlsgtgipdlgdflfipgtgemklepgthedpdqgyrsryshdkewaspnyyaveladyg
vkaemtsgvrsgmfrftypesdnafimidmnhtlwqscewsnlrmindstitgyklvkgw
gperhvyftatfskkltglrfvqdkkpviyntsrfrssyeawgknlmacisfdtkageev
tvktaisavstdgarnnmkeldgltfnelrakgealwekelgkytltadrktketfytsa
yhaalhpfifqdsdgqfrgldkniekaegftnytvfslwdtyralhpwfnlvqqevnadi
ansmlahydksvekmlpiwsfygnetwcmigyhavsvladmivkevkgfdyerayeamkt
tamnsnydclpeyremgyvpfdkeaesvsktleyayddyciaqaakklgkeddyhyflnr
alsyqtlidpetkymrgrdskgdwrtpftpvayqgpgsvhgwgditegftmqytwyvpqd
vqgyineagkelfrkrldelftvelpddipgahdiqgrigaywhgnepchhvaylynylk
epwkcqkwirtivdrfygntpdalsgnddcgqmsawymfncigfypvapssniynigspc
aeaitvrmsngkniemtadnwspknlyvkelyvngkkydksyltyddirdgvklrfvmsg
kpnykravsdeavppsislpektmkykss

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6f92C (C:)
maqtekltdyvnpfvgtdgygnvypgaqipfggiqispdtdsrfydaasgykynhltlmg
fslthlsgtgipdlgdflfipgtgemklepgthedpdqgyrsryshdkewaspnyyavel
adygvkaemtsgvrsgmfrftypesdnafimidmnhtlwqscewsnlrmindstitgykl
vkgwgperhvyftatfskkltglrfvqdkkpviyntsrfrssyeawgknlmacisfdtka
geevtvktaisavstdgarnnmkeldgltfnelrakgealwekelgkytltadrktketf
ytsayhaalhpfifqdsdgqfrgldkniekaegftnytvfslwdtyralhpwfnlvqqev
nadiansmlahydksvekmlpiwsfygnetwcmigyhavsvladmivkevkgfdyeraye
amkttamnsnydclpeyremgyvpfdkeaesvsktleyayddyciaqaakklgkeddyhy
flnralsyqtlidpetkymrgrdskgdwrtpftpvayqgpgsvhgwgditegftmqytwy
vpqdvqgyineagkelfrkrldelftvelpddipgahdiqgrigaywhgnepchhvayly
nylkepwkcqkwirtivdrfygntpdalsgnddcgqmsawymfncigfypvapssniyni
gspcaeaitvrmsngkniemtadnwspknlyvkelyvngkkydksyltyddirdgvklrf
vmsgkpnykravsdeavppsislpektmkykssigflehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6f92C (C:)
ekltdyvnpfvgtdgygnvypgaqipfggiqispdtdsrfydaasgykynhltlmgfslt
hlsgtgipdlgdflfipgtgemklepgthedpdqgyrsryshdkewaspnyyaveladyg
vkaemtsgvrsgmfrftypesdnafimidmnhtlwqscewsnlrmindstitgyklvkgw
gperhvyftatfskkltglrfvqdkkpviyntsrfrssyeawgknlmacisfdtkageev
tvktaisavstdgarnnmkeldgltfnelrakgealwekelgkytltadrktketfytsa
yhaalhpfifqdsdgqfrgldkniekaegftnytvfslwdtyralhpwfnlvqqevnadi
ansmlahydksvekmlpiwsfygnetwcmigyhavsvladmivkevkgfdyerayeamkt
tamnsnydclpeyremgyvpfdkeaesvsktleyayddyciaqaakklgkeddyhyflnr
alsyqtlidpetkymrgrdskgdwrtpftpvayqgpgsvhgwgditegftmqytwyvpqd
vqgyineagkelfrkrldelftvelpddipgahdiqgrigaywhgnepchhvaylynylk
epwkcqkwirtivdrfygntpdalsgnddcgqmsawymfncigfypvapssniynigspc
aeaitvrmsngkniemtadnwspknlyvkelyvngkkydksyltyddirdgvklrfvmsg
kpnykravsdeavppsislpektmkyk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6f92D (D:)
maqtekltdyvnpfvgtdgygnvypgaqipfggiqispdtdsrfydaasgykynhltlmg
fslthlsgtgipdlgdflfipgtgemklepgthedpdqgyrsryshdkewaspnyyavel
adygvkaemtsgvrsgmfrftypesdnafimidmnhtlwqscewsnlrmindstitgykl
vkgwgperhvyftatfskkltglrfvqdkkpviyntsrfrssyeawgknlmacisfdtka
geevtvktaisavstdgarnnmkeldgltfnelrakgealwekelgkytltadrktketf
ytsayhaalhpfifqdsdgqfrgldkniekaegftnytvfslwdtyralhpwfnlvqqev
nadiansmlahydksvekmlpiwsfygnetwcmigyhavsvladmivkevkgfdyeraye
amkttamnsnydclpeyremgyvpfdkeaesvsktleyayddyciaqaakklgkeddyhy
flnralsyqtlidpetkymrgrdskgdwrtpftpvayqgpgsvhgwgditegftmqytwy
vpqdvqgyineagkelfrkrldelftvelpddipgahdiqgrigaywhgnepchhvayly
nylkepwkcqkwirtivdrfygntpdalsgnddcgqmsawymfncigfypvapssniyni
gspcaeaitvrmsngkniemtadnwspknlyvkelyvngkkydksyltyddirdgvklrf
vmsgkpnykravsdeavppsislpektmkykssigflehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6f92D (D:)
ekltdyvnpfvgtdgygnvypgaqipfggiqispdtdsrfydaasgykynhltlmgfslt
hlsgtgipdlgdflfipgtgemklepgthedpdqgyrsryshdkewaspnyyaveladyg
vkaemtsgvrsgmfrftypesdnafimidmnhtlwqscewsnlrmindstitgyklvkgw
gperhvyftatfskkltglrfvqdkkpviyntsrfrssyeawgknlmacisfdtkageev
tvktaisavstdgarnnmkeldgltfnelrakgealwekelgkytltadrktketfytsa
yhaalhpfifqdsdgqfrgldkniekaegftnytvfslwdtyralhpwfnlvqqevnadi
ansmlahydksvekmlpiwsfygnetwcmigyhavsvladmivkevkgfdyerayeamkt
tamnsnydclpeyremgyvpfdkeaesvsktleyayddyciaqaakklgkeddyhyflnr
alsyqtlidpetkymrgrdskgdwrtpftpvayqgpgsvhgwgditegftmqytwyvpqd
vqgyineagkelfrkrldelftvelpddipgahdiqgrigaywhgnepchhvaylynylk
epwkcqkwirtivdrfygntpdalsgnddcgqmsawymfncigfypvapssniynigspc
aeaitvrmsngkniemtadnwspknlyvkelyvngkkydksyltyddirdgvklrfvmsg
kpnykravsdeavppsislpektmkykssigflehhhhhh