PDB entry 6f8g

View 6f8g on RCSB PDB site
Description: co-crystal structure of spop math domain and hamster pdx1 fragment
Deposited on 2017-12-13, released 2018-11-28
The last revision was dated 2019-02-13, with a file datestamp of 2019-02-08.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Speckle-type POZ protein
    Species: Homo sapiens [TaxId:9606]
    Gene: SPOP
    Database cross-references and differences (RAF-indexed):
    • Uniprot O43791 (6-End)
      • expression tag (2-5)
  • Chain 'B':
    Compound: Speckle-type POZ protein
    Species: Homo sapiens [TaxId:9606]
    Gene: SPOP
    Database cross-references and differences (RAF-indexed):
    • Uniprot O43791 (6-End)
      • expression tag (2-5)
  • Chain 'C':
    Compound: Speckle-type POZ protein
    Species: Homo sapiens [TaxId:9606]
    Gene: SPOP
    Database cross-references and differences (RAF-indexed):
    • Uniprot O43791 (6-End)
      • expression tag (2-5)
  • Chain 'D':
    Compound: Speckle-type POZ protein
    Species: Homo sapiens [TaxId:9606]
    Gene: SPOP
    Database cross-references and differences (RAF-indexed):
    • Uniprot O43791 (6-End)
      • expression tag (4-5)
  • Chain 'E':
    Compound: Pancreas/duodenum homeobox protein 1
    Species: Mesocricetus auratus, synthetic [TaxId:10036]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Pancreas/duodenum homeobox protein 1
    Species: Mesocricetus auratus, synthetic [TaxId:10036]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Pancreas/duodenum homeobox protein 1
    Species: Mesocricetus auratus, synthetic [TaxId:10036]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Pancreas/duodenum homeobox protein 1
    Species: Mesocricetus auratus, synthetic [TaxId:10036]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f8gA (A:)
gamasgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeesk
dylslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdf
lldeangllpddkltlfcevsvvqd

    Sequence, based on observed residues (ATOM records):
    >6f8gA (A:)
masgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeeskdy
lslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdfll
deangllpddkltlfcevsvvq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f8gB (B:)
gamasgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeesk
dylslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdf
lldeangllpddkltlfcevsvvqd

    Sequence, based on observed residues (ATOM records):
    >6f8gB (B:)
masgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeeskdy
lslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdfll
deangllpddkltlfcevsvvq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6f8gC (C:)
gamasgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeesk
dylslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdf
lldeangllpddkltlfcevsvvqd

    Sequence, based on observed residues (ATOM records):
    >6f8gC (C:)
masgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeeskdy
lslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdfll
deangllpddkltlfcevsvvq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6f8gD (D:)
gamasgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeesk
dylslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdf
lldeangllpddkltlfcevsvvqd

    Sequence, based on observed residues (ATOM records):
    >6f8gD (D:)
sgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeeskdyls
lylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdfllde
angllpddkltlfcevsvvq

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6f8gE (E:)
epeqdsavtsge

    Sequence, based on observed residues (ATOM records):
    >6f8gE (E:)
peqdsavtsge

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6f8gF (F:)
epeqdsavtsge

    Sequence, based on observed residues (ATOM records):
    >6f8gF (F:)
peqdsavtsg

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6f8gG (G:)
epeqdsavtsge

    Sequence, based on observed residues (ATOM records):
    >6f8gG (G:)
peqdsavtsge

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6f8gH (H:)
epeqdsavtsge

    Sequence, based on observed residues (ATOM records):
    >6f8gH (H:)
eqdsavtsg