PDB entry 6f8g
View 6f8g on RCSB PDB site
Description: co-crystal structure of spop math domain and hamster pdx1 fragment
Deposited on
2017-12-13, released
2018-11-28
The last revision was dated
2019-02-13, with a file datestamp of
2019-02-08.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Speckle-type POZ protein
Species: Homo sapiens [TaxId:9606]
Gene: SPOP
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Speckle-type POZ protein
Species: Homo sapiens [TaxId:9606]
Gene: SPOP
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Speckle-type POZ protein
Species: Homo sapiens [TaxId:9606]
Gene: SPOP
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Speckle-type POZ protein
Species: Homo sapiens [TaxId:9606]
Gene: SPOP
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Pancreas/duodenum homeobox protein 1
Species: Mesocricetus auratus, synthetic [TaxId:10036]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Pancreas/duodenum homeobox protein 1
Species: Mesocricetus auratus, synthetic [TaxId:10036]
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: Pancreas/duodenum homeobox protein 1
Species: Mesocricetus auratus, synthetic [TaxId:10036]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Pancreas/duodenum homeobox protein 1
Species: Mesocricetus auratus, synthetic [TaxId:10036]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.
- Chain 'A':
Sequence, based on SEQRES records:
>6f8gA (A:)
gamasgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeesk
dylslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdf
lldeangllpddkltlfcevsvvqd
Sequence, based on observed residues (ATOM records):
>6f8gA (A:)
masgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeeskdy
lslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdfll
deangllpddkltlfcevsvvq
- Chain 'B':
Sequence, based on SEQRES records:
>6f8gB (B:)
gamasgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeesk
dylslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdf
lldeangllpddkltlfcevsvvqd
Sequence, based on observed residues (ATOM records):
>6f8gB (B:)
masgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeeskdy
lslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdfll
deangllpddkltlfcevsvvq
- Chain 'C':
Sequence, based on SEQRES records:
>6f8gC (C:)
gamasgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeesk
dylslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdf
lldeangllpddkltlfcevsvvqd
Sequence, based on observed residues (ATOM records):
>6f8gC (C:)
masgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeeskdy
lslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdfll
deangllpddkltlfcevsvvq
- Chain 'D':
Sequence, based on SEQRES records:
>6f8gD (D:)
gamasgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeesk
dylslylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdf
lldeangllpddkltlfcevsvvqd
Sequence, based on observed residues (ATOM records):
>6f8gD (D:)
sgkvvkfsymwtinnfsfcreemgeviksstfssgandklkwclrvnpkgldeeskdyls
lylllvscpksevrakfkfsilnakgeetkamesqrayrfvqgkdwgfkkfirrdfllde
angllpddkltlfcevsvvq
- Chain 'E':
Sequence, based on SEQRES records:
>6f8gE (E:)
epeqdsavtsge
Sequence, based on observed residues (ATOM records):
>6f8gE (E:)
peqdsavtsge
- Chain 'F':
Sequence, based on SEQRES records:
>6f8gF (F:)
epeqdsavtsge
Sequence, based on observed residues (ATOM records):
>6f8gF (F:)
peqdsavtsg
- Chain 'G':
Sequence, based on SEQRES records:
>6f8gG (G:)
epeqdsavtsge
Sequence, based on observed residues (ATOM records):
>6f8gG (G:)
peqdsavtsge
- Chain 'H':
Sequence, based on SEQRES records:
>6f8gH (H:)
epeqdsavtsge
Sequence, based on observed residues (ATOM records):
>6f8gH (H:)
eqdsavtsg