PDB entry 6f6d

View 6f6d on RCSB PDB site
Description: the catalytic domain of kdm6b in complex with h3(17-33)k18ia21m peptide
Deposited on 2017-12-05, released 2018-10-17
The last revision was dated 2018-10-17, with a file datestamp of 2018-10-12.
Experiment type: XRAY
Resolution: 1.82 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lysine-specific demethylase 6b
    Species: Homo sapiens [TaxId:9606]
    Gene: Kdm6b, Jmjd3, Kiaa0346
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Histone 3 peptide H3(17-33)K18IA21M
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6F6D (0-16)
  • Heterogens: FE, ZN, AKG, TBU, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f6dA (A:)
mdvvrasrnakvkgkfresylspaqsvkpkinteeklpreklnpptpsiyleskrdafsp
vllqfctdprnpitvirglagslrlnlglfstktlveasgehtvevrtqvqqpsdenwdl
tgtrqiwpcessrshttiakyaqyqassfqeslqeekesedeeseepdsttgtppssapd
pknhhiikfgtnidlsdakrwkpqlqellklpafmrvtstgnmlshvghtilgmntvqly
mkvpgsrtpghqennnfcsvninigpgdcewfavhehywetisafcdrhgvdyltgswwp
ilddlyasnipvyrfvqrpgdlvwinagtvhwvqatgwcnniawnvgpltayqyqlaler
yewnevknvksivpmihvswnvartvkisdpdlfkmikfcllqsmkhcqvqreslvragk
kiayqgrvkdepayycnecdvevfnilfvtsengsrntylvhcegcarrrsaglqgvvvl
eqyrteelaqaydaftlapastsrhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6f6dA (A:)
esylspaqsvkpkinteeklpreklnpptpsiyleskrdafspvllqfctdprnpitvir
glagslrlnlglfstktlveasgehtvevrtqvqqpsdenwdltgtrqiwpcessrshtt
iakyaqyqassfqeshiikfgtnidlsdakrwkpqlqellklpafmrvtstgnmlshvgh
tilgmntvqlymkvpgsrtpghqennnfcsvninigpgdcewfavhehywetisafcdrh
gvdyltgswwpilddlyasnipvyrfvqrpgdlvwinagtvhwvqatgwcnniawnvgpl
tayqyqlaleryewnevknvksivpmihvswnvartvkisdpdlfkmikfcllqsmkhcq
vqreslvragkkiayqgrvkdepayycnecdvevfnilfvtsengsrntylvhcegcarr
rsaglqgvvvleqyrteelaqaydaftlap

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6f6dB (B:)
riqlmtkaarksapatg