PDB entry 6f5w

View 6f5w on RCSB PDB site
Description: photorhabdus asymbiotica lectin (phl) in complex with propargyl- fucoside
Deposited on 2017-12-04, released 2018-01-31
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.91 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lectin PHL
    Species: Photorhabdus asymbiotica [TaxId:291112]
    Gene: PAU_00698
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: lectin PHL
    Species: Photorhabdus asymbiotica [TaxId:291112]
    Gene: PAU_00698
    Database cross-references and differences (RAF-indexed):
  • Heterogens: KG1, NA, CL, DMS, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f5wA (A:)
mqpintsnpdntasyvkdeveitsstialseivsvvntsdgrlevfgvgtdkavwhnrqm
aphtgspwsgwsslkgqvtskpvvyintdgrlevfargtdnalwhiwqtatnagwsnwqs
lggvitsnpaiyantdgrlevfargadnalwhisqttahsgpwsswaslngvitsnptvh
insdgrlevfargtdnalwhiwqtapdsnlwssweslngiitsdpvvidtadgrlevfar
gadnalwhiwqtishsgpwsgwqslngvitsapavakncdnrleafargtdnalwhtwqt
vshsgpwsswqslngvitsaptavrdadgrlevfargtdnalwltwqtasswspwislgg
vlidasaik

    Sequence, based on observed residues (ATOM records):
    >6f5wA (A:)
tialseivsvvntsdgrlevfgvgtdkavwhnrqmaphtgspwsgwsslkgqvtskpvvy
intdgrlevfargtdnalwhiwqtatnagwsnwqslggvitsnpaiyantdgrlevfarg
adnalwhisqttahsgpwsswaslngvitsnptvhinsdgrlevfargtdnalwhiwqta
pdsnlwssweslngiitsdpvvidtadgrlevfargadnalwhiwqtishsgpwsgwqsl
ngvitsapavakncdnrleafargtdnalwhtwqtvshsgpwsswqslngvitsaptavr
dadgrlevfargtdnalwltwqtasswspwislggvlidasaik

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f5wB (B:)
mqpintsnpdntasyvkdeveitsstialseivsvvntsdgrlevfgvgtdkavwhnrqm
aphtgspwsgwsslkgqvtskpvvyintdgrlevfargtdnalwhiwqtatnagwsnwqs
lggvitsnpaiyantdgrlevfargadnalwhisqttahsgpwsswaslngvitsnptvh
insdgrlevfargtdnalwhiwqtapdsnlwssweslngiitsdpvvidtadgrlevfar
gadnalwhiwqtishsgpwsgwqslngvitsapavakncdnrleafargtdnalwhtwqt
vshsgpwsswqslngvitsaptavrdadgrlevfargtdnalwltwqtasswspwislgg
vlidasaik

    Sequence, based on observed residues (ATOM records):
    >6f5wB (B:)
tialseivsvvntsdgrlevfgvgtdkavwhnrqmaphtgspwsgwsslkgqvtskpvvy
intdgrlevfargtdnalwhiwqtatnagwsnwqslggvitsnpaiyantdgrlevfarg
adnalwhisqttahsgpwsswaslngvitsnptvhinsdgrlevfargtdnalwhiwqta
pdsnlwssweslngiitsdpvvidtadgrlevfargadnalwhiwqtishsgpwsgwqsl
ngvitsapavakncdnrleafargtdnalwhtwqtvshsgpwsswqslngvitsaptavr
dadgrlevfargtdnalwltwqtasswspwislggvlidasaik