PDB entry 6f5o

View 6f5o on RCSB PDB site
Description: a mechanism for the activation of the influenza virus transcriptase
Deposited on 2017-12-02, released 2018-06-27
The last revision was dated 2018-07-04, with a file datestamp of 2018-06-29.
Experiment type: EM
Resolution: 9.8 Å
R-factor: N/A
AEROSPACI score: -0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polymerase acidic protein
    Species: Influenza B virus [TaxId:1601067]
    Gene: PA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5V8Z9 (1-End)
      • expression tag (0)
  • Chain 'B':
    Compound: RNA-directed RNA polymerase catalytic subunit
    Species: Influenza B virus [TaxId:1601067]
    Gene: Pb1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Polymerase basic protein 2
    Species: Influenza B virus [TaxId:1601067]
    Gene: pb2
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 3' promoter vRNA
    Species: INFLUENZA B VIRUS (B/MEMPHIS/13/2003), synthetic [TaxId:1601067]
  • Chain 'V':
    Compound: 5' promoter vRNA
    Species: INFLUENZA B VIRUS (B/MEMPHIS/13/2003), synthetic [TaxId:1601067]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f5oA (A:)
    smdtfitrnfqttiiqkakntmaefsedpelqpamlfnicvhlevcyvisdmnfldeegk
    aytalegqgkeqnlrpqyeviegmprtiawmvqrslaqehgietpkyladlfdyktkrfi
    evgitkgladdyfwkkkeklgnsmelmifsynqdyslsnessldeegkgrvlsrltelqa
    elslknlwqvligeedvekgidfklgqtisrlrdisvpagfsnfegmrsyidnidpkgai
    ernlarmsplvsvtpkkltwedlrpigphiynhelpevpynafllmsdelglanmtegks
    kkpktlakeclekystlrdqtdpilimksekanenflwklwrdcvntisneemsnelqkt
    nyakwatgdgltyqkimkevaiddetmcqeepkipnkcrvaawvqtemnllstltskral
    dlpeigpdvapvehvgserrkyfvneinyckastvmmkyvlfhtsllnesnasmgkykvi
    pitnrvvnekgesfdmlyglavkgqshlrgdtdvvtvvtfefsstdprvdsgkwpkytvf
    rigslfvsgreksvylycrvngtnkiqmkwgmearrcllqsmqqmeaiveqessiqgydm
    tkacfkgdrvnspktfsigtqegklvkgsfgkalrviftkclmhyvfgnaqlegfsaesr
    rlllliqalkdrkgpwvfdlegmysgieecisnnpwviqsaywfnewlgfekegskvles
    vdeimde
    

    Sequence, based on observed residues (ATOM records):
    >6f5oA (A:)
    smdtfitrnfqttiiqkakntmaefsedpelqpamlfnicvhlevcyvisdmnfldeegk
    aytaqnlrpqyeviegmprtiawmvqrslaqehgietpkyladlfdyktkrfievgitkg
    laddyfwkkkeklgnsmelmifsynqdyslsnessldeegkgrvlsrltelqaelslknl
    wqvligeedvekgidfklgqtisrlrdisvpagfsnfegmrsyidnidpkgaiernlarm
    splvsvtpkkltwedlrpigphiynhelpevpynafllmsdelglanmtegkskkpktla
    keclekystlrdqtdpilimksekanenflwklwrdcvntisneemsnelqktnyakwat
    gdgltyqkimkevaiddetmcqeepkipnkcrvaawvqtemnllstltskraldlpeigp
    dvapvehvgserrkyfvneinyckastvmmkyvlfhtsllnesnasmgkykvipitnrvv
    nekgesfdmlyglavkgqshlrgdtdvvtvvtfefsstdprvdsgkwpkytvfrigslfv
    sgreksvylycrvngtnkiqmkwgmearrcllqsmqqmeaiveqessiqgydmtkacfkg
    drvnspktfsigtqegklvkgsfgkalrviftkclmhyvfgnaqlegfsaesrrlllliq
    alkdrkgpwvfdlegmysgieecisnnpwviqsaywfnewlgfekegskvlesvde
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f5oB (B:)
    mninpyflfidvpiqaaisttfpytgvppyshgtgtgytidtvirtheysnkgkqyisdv
    tgctmvdptngplpednepsayaqldcvlealdrmdeehpglfqaasqnametlmvttvd
    kltqgrqtfdwtvcrnqpaatalnttitsfrlndlngadkgglipfcqdiidsldrpemt
    ffsvknikkklpaknrkgflikripmkvkdkitkveyikralslntmtkdaergklkrra
    iatagiqirgfvlvvenlaknicenleqsglpvggnekkaklsnavakmlsncppggism
    tvtgdntkwneclnpriflamteritrdspiwfrdfcsiapvlfsnkiarlgkgfmitsk
    tkrlkaqipcpdlfsipleryneetraklkklkpffneegtaslspgmmmgmfnmlstvl
    gvaalgiknignkeylwdglqssddfalfvnakdeetcmegindfyrtckllginmskkk
    sycnetgmfeftsmfyrdgfvsnfamelpsfgvagvnesadmaigmtiiknnminngmgp
    ataqtaiqlfiadyrytykchrgdskvegkrmkiikelwentkgrdgllvadggpniynl
    rnlhipeivlkynlmdpeykgrllhpqnpfvghlsiegikeaditpahgpvkkmdydavs
    gthswrtkrnrsilntdqrnmileeqcyakccnlfeacfnsasyrkpvgqhsmleamahr
    lrmdarldyesgrmskddfekamahlgeigyi
    

    Sequence, based on observed residues (ATOM records):
    >6f5oB (B:)
    mninpyflfidvpiqaaisttfpytgvppyshgtgtgytidtvirtheysnkgkqyisdv
    tgctmvdptngplpednepsayaqldcvlealdrmdeehpglfqaasqnametlmvttvd
    kltqgrqtfdwtvcrnqpaatalnttitsfrlndlngadkgglipfcqdiidsldrpemt
    ffsvknikkklpaknrkgflikripmkvkdkitkveyikralslntmtkdaergklkrra
    iatagiqirgfvlvvenlaknicenleqsglpvggnekkaklsnavakmlsncppggism
    tvtgdntkwneclnpriflamteritrdspiwfrdfcsiapvlfsnkiarlgkgfmitsk
    tkrlkaqipcpdlfsipleryneetraklkklkpffneegtaslspgmmmgmfnmlstvl
    gvaalgiknignkeylwdglqssddfalfvnakdeetcmegindfyrtckllginmskkk
    sycnetgmfeftsmfyrdgfvsnfamelpsfgvagvnesadmaigmtiiknnminngmgp
    ataqtaiqlfiadyrytykchrgdskvegkrmkiikelwentkgrdgllvadggpniynl
    rnlhipeivlkynlmdpeykgrllhpqnpfvghlsikmdydavsgthswrtkrnrsilnt
    dqrnmileeqcyakccnlfeacfnsasyrkpvgqhsmleamahrlrmdarldyesgrmsk
    ddfekamahlgei
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6f5oC (C:)
    mtlakiellkqllrdneaktvlkqttvdqyniirkfntsrieknpslrmkwamcsnfpla
    ltkgdmanripleykgiqlktnaedigtkgqmcsiaavtwwntygpigdtegfervyesf
    flrkmrldnatwgritfgpvervrkrvllnpltkemppdeasnvimeilfpkeagipres
    twihrelikekreklkgtmitpivlaymlerelvarrrflpvagatsaefiemlhclqge
    nwrqiyhpggnkltesrsqsmivacrkiirrsivasnplelaveianktvidteplkscl
    aaidggdvacdiiraalglkirqrqrfgrlelkrisgrgfkndeeiligngtiqkigiwd
    geeefhvrcgecrgilkkskmklekllinsakkedmrdliilcmvfsqdtrmfqgvrgei
    nflnragqllspmyqlqryflnrsndlfdqwgyeespkaselhginesmnasdytlkgvv
    vtrnviddfsstetekvsitknlslikrtgevimgandvselesqaqlmitydtpkmwem
    gttkelvqntyqwvlknlvtlkaqfllgkedmfqwdafeafesiipqkmagqysgfarav
    lkqmrdqevmktdqfikllpfcfsppklrsngepyqflklvlkgggenfievrkgsplfs
    ynpqtevlticgrmmslkgkiedeernrsmgnavlagflvsgkydpdlgdfktieelekl
    kpgekanillyqgkpvkvvkrkrysalsndisqgikrqrmtvesmgwals
    

    Sequence, based on observed residues (ATOM records):
    >6f5oC (C:)
    mtlakiellkqllrdneaktvlkqttvdqyniirkfntsrieknpslrmkwamcsnfpla
    ltkgdmanripleykgiqlktnaedigtkgqmcsiaavtwwntygpigdtegfervyesf
    flrkmrldnatwgritfgpvervrkrvllnpltkemppdeasnvimeilfpkeagipres
    twihrelikekreklkgtmitpivlaymlerelvarrrflpvagatsaefiemlhclqge
    nwrqiyhpggnkltesrsqsmivacrkiirrsivasnplelaveianktvidteplkscl
    aaidggdvacdiiraalglkirqrqrfgrlelkrisgrgfkndeeiligngtiqkigiwd
    geeefhvrcgecrgilkkskmklekllinsakkedmrdliilcmvfsqdtrmfqgvrgei
    nflnragqllspmyqlqryflnrsndlfdqwgyeespkaselhginesmnasdytlkgvv
    vtrnvkvsitknlslikrtgevimgandvselesqaqlmitydtpkmwemgttkelvqnt
    yqwvlknlvtlkaqfllgkedmfqwdafeafesiipqkmagqysgfaravlkqmrdqevm
    ktdqfikllpfcfsppklrsngepyqflklvlkgggenfievrkgsplfsynpqtevlti
    cgrmmslkgkiedeernrsmgnavlagflvsgkydpdlgdfktieeleklkpgekanill
    yqgkpvkvvk
    

  • Chain 'R':
    No sequence available.

  • Chain 'V':
    No sequence available.