PDB entry 6f5j

View 6f5j on RCSB PDB site
Description: structure of deformed wing virus carrying the gfp gene
Deposited on 2017-12-01, released 2018-12-12
The last revision was dated 2019-07-31, with a file datestamp of 2019-07-26.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Genome polyprotein
    Species: DEFORMED WING VIRUS [TaxId:198112]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Genome polyprotein
    Species: DEFORMED WING VIRUS [TaxId:198112]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Genome polyprotein
    Species: DEFORMED WING VIRUS [TaxId:198112]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f5jA (A:)
    geesrnttvldttttlqssgfgraffgeafndlktlmrryqlygqlllsvttdkdidhcm
    ftfpclpqglaldigsagspheifnrcrdgiipliasgyrfyrgdlrykivfpsnvnsni
    wvqhrpdrrlegwsaakivncdavstgqgvynhgyashiqitrvnnvielevpfynatcy
    nylqafnassaassyavslgeisvgfqatsddiasivnkpvtiyysigdgmqfsqwvgyq
    pmmildqlpapvvravpe
    

    Sequence, based on observed residues (ATOM records):
    >6f5jA (A:)
    eesrnttvldttttlqssgfgraffgeafndlktlmrryqlygqlllsvttdkdidhcmf
    tfpclpqglaldigsagspheifnrcrdgiipliasgyrfyrgdlrykivfpsnvnsniw
    vqhrpdrrlegwsaakivncdavstgqgvynhgyashiqitrvnnvielevpfynatcyn
    ylqafnassaassyavslgeisvgfqatsddiasivnkpvtiyysigdgmqfsqwvgyqp
    mmildqlpapvv
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f5jB (B:)
    mdnpnpgpdgegevelekdsnvvlttqrdpstsipapvsvkwsrwtsndvvddyatitsr
    wyqiaefvwskddpfdkelarlilprallssieansdaicdvpntipfkvhaywrgdmev
    rvqinsnkfqvgqlqatwyysdhenlnisskrsvygfsqmdhalisasasneaklvipfk
    hvypflptrivpdwttgildmgalnirviaplrmsatgpttcnvvvfiklnnseftgtss
    gkfyasqirakpe
    

    Sequence, based on observed residues (ATOM records):
    >6f5jB (B:)
    dnpnpgpdgegevelekdsnvvlttqrdpstsipapvsvkwsrwtsndvvddyatitsrw
    yqiaefvwskddpfdkelarlilprallssieansdaicdvpntipfkvhaywrgdmevr
    vqinsnkfqvgqlqatwyysdhenlnisskrsvygfsqmdhalisasasneaklvipfkh
    vypflptrivpdwttgildmgalnirviaplrmsatgpttcnvvvfiklnnseftgtssg
    kfyasqira
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6f5jC (C:)
    dnpsyqqsprhfvptgmhslalgtnlveplhalrldaagttqhpvgcapdedmtvssias
    ryglirrvqwkkdhakgslllqldadpfveqriegtnpislywfapvgvvssmfmqwrgs
    leyrfdiiasqfhtgrlivgyvpgltaslqlqmdymklksssyvvfdlqesnsftfevpy
    vsyrpwwvrkyggnylpsstdapstlfmyvqvplipmeavsdtidinvyvrggssfevcv
    pvqpslglnwntdfilrndeeyraktgyapyyagvwhsfnnsnslvfrwgsasdqiaqwp
    tisvprgelaflrikdgkqaavgtqpwrtmvvwpsghgynigiptynaerarqlaqhlyg
    ggsltdekakqlfvpanqqgpgkvsngnpvwevmraplatqrahiqdfefieaipe
    

    Sequence, based on observed residues (ATOM records):
    >6f5jC (C:)
    npsyqqsprhfvptgmhslalgtnlveplhalrldaagttqhpvgcapdedmtvssiasr
    yglirrvqwkkdhakgslllqldadpfveqriegtnpislywfapvgvvssmfmqwrgsl
    eyrfdiiasqfhtgrlivgyvpgltaslqlqmdymklksssyvvfdlqesnsftfevpyv
    syrpwwvrkyggnylpsstdapstlfmyvqvplipmeavsdtidinvyvrggssfevcvp
    vqpslglnwntdfilryraktgyapyyagvwhsfnnsnslvfrwgsasdqiaqwptisvp
    rgelaflrikdgkqaavgtqpwrtmvvwpsghgynigiptynaerarqlaqhlygggslt
    dekakqlfvpanqqgpgkvsngnpvwevmrapl