PDB entry 6f5f

View 6f5f on RCSB PDB site
Description: structure of artd2/parp2 wgr domain bound to double strand dna with 5 nucleotide overhang and 5'phosphate
Deposited on 2017-12-01, released 2018-10-10
The last revision was dated 2018-12-26, with a file datestamp of 2018-12-21.
Experiment type: XRAY
Resolution: 2.98 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Poly [ADP-ribose] polymerase 2
    Species: Homo sapiens [TaxId:9606]
    Gene: PARP2, ADPRT2, ADPRTL2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Poly [ADP-ribose] polymerase 2
    Species: Homo sapiens [TaxId:9606]
    Gene: PARP2, ADPRT2, ADPRTL2
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Poly [ADP-ribose] polymerase 2
    Species: Homo sapiens [TaxId:9606]
    Gene: PARP2, ADPRT2, ADPRTL2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Poly [ADP-ribose] polymerase 2
    Species: Homo sapiens [TaxId:9606]
    Gene: PARP2, ADPRT2, ADPRTL2
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (5'-d(p*cp*gp*gp*tp*cp*gp*cp*cp*tp*ap*tp*ap*gp*gp*c)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'F':
    Compound: DNA (5'-d(p*cp*gp*gp*tp*cp*gp*cp*cp*tp*ap*tp*ap*gp*gp*c)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'G':
    Compound: DNA (5'-d(p*cp*gp*gp*tp*cp*gp*cp*cp*tp*ap*tp*ap*gp*gp*c)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'H':
    Compound: DNA (5'-d(p*cp*gp*gp*tp*cp*gp*cp*cp*tp*ap*tp*ap*gp*gp*c)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f5fA (A:)
smgkapvdpectakvgkahvycegndvydvmlnqtnlqfnnnkyyliqlleddaqrnfsv
wmrwgrvgkmgqhslvacsgnlnkakeifqkkfldktknnwedrekfekvpgkydmlqmd
yatntqdeeet

    Sequence, based on observed residues (ATOM records):
    >6f5fA (A:)
apvdpectakvgkahvycegndvydvmlnqtnlqfnnnkyyliqlleddaqrnfsvwmrw
grvgkmgqhslvacsgnlnkakeifqkkfldktknnwedrekfekvpgkydmlqmd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f5fB (B:)
smgkapvdpectakvgkahvycegndvydvmlnqtnlqfnnnkyyliqlleddaqrnfsv
wmrwgrvgkmgqhslvacsgnlnkakeifqkkfldktknnwedrekfekvpgkydmlqmd
yatntqdeeet

    Sequence, based on observed residues (ATOM records):
    >6f5fB (B:)
apvdpectakvgkahvycegndvydvmlnqtnlqfnnnkyyliqlleddaqrnfsvwmrw
grvgkmgqhslvacsgnlnkakeifqkkfldktknnwedrekfekvpgkydmlqmd

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6f5fC (C:)
smgkapvdpectakvgkahvycegndvydvmlnqtnlqfnnnkyyliqlleddaqrnfsv
wmrwgrvgkmgqhslvacsgnlnkakeifqkkfldktknnwedrekfekvpgkydmlqmd
yatntqdeeet

    Sequence, based on observed residues (ATOM records):
    >6f5fC (C:)
apvdpectakvgkahvycegndvydvmlnqtnlqfnnnkyyliqlleddaqrnfsvwmrw
grvgkmgqhslvacsgnlnkakeifqkkfldktknnwedrekfekvpgkydmlqm

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6f5fD (D:)
smgkapvdpectakvgkahvycegndvydvmlnqtnlqfnnnkyyliqlleddaqrnfsv
wmrwgrvgkmgqhslvacsgnlnkakeifqkkfldktknnwedrekfekvpgkydmlqmd
yatntqdeeet

    Sequence, based on observed residues (ATOM records):
    >6f5fD (D:)
apvdpectakvgkahvycegndvydvmlnqtnlqfnnnkyyliqlleddaqrnfsvwmrw
grvgkmgqhslvacsgnlnkakeifqkkfldktknnwedrekfekvpgkydmlq

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.