PDB entry 6f5d

View 6f5d on RCSB PDB site
Description: trypanosoma brucei f1-atpase
Deposited on 2017-12-01, released 2018-02-21
The last revision was dated 2018-08-15, with a file datestamp of 2018-08-10.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: ATP synthase gamma subunit
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: ATP synthase subunit delta, mitochondrial
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DPG2 (Start-164)
      • conflict (31)
  • Chain 'I':
    Compound: ATP synthase subunit epsilon, mitochondrial
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: ATP synthase subunit p18, mitochondrial
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: ATP synthase subunit p18, mitochondrial
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: ATP synthase subunit p18, mitochondrial
    Species: Trypanosoma brucei brucei [TaxId:5702]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ADP, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f5dA (A:)
aatapagasttsstssaqksffkttemigyvhsidgtiatlipapgnpgvayntiiqiqv
spttfaaglvfnlekdgrigiilmdnitevqsgqkvmatgqllhipvgagvlgkvvnplg
hevpvglvtrsrrlldstlgkvdtgapnivsrspvnynlltgfkavdtmipigrgqreli
vgdrqtgktsiavstiinqvrinqqilsknavisiyvsigqrcsnvarihrllqsygalr
yttvmaataaepaglqylapyagvtmgeyfmnrgrhclcvyddlskqavayrqislllrr
ppgreaypgdvfylhsrlleraamlspgkgggsvtalpivetlsndvtayivtnvisitd
gqiyldtklftggqrpavniglsvsrvgssaqnaamkgvagklkgilaeyrklaadsvgg
qqvqtipmirgarfvalfnqkqpsyfmnaivslyaclngylddvkvqyvkfyeyllvhrd
lgimygtaknkffymyvqelnylirfftlnspilhgeleemlkqhthlflqhyqskmnai
ksekdvkalknllysckrav

    Sequence, based on observed residues (ATOM records):
    >6f5dA (A:)
sffkttemigyvhsidgtiatlipapgnpgvayntiiqiqvspttfaaglvfnlekdgri
giilmdnitevqsgqkvmatgqllhipvgagvlgkvvnplghevpvstlgkvdtgapniv
srspvnynlltgfkavdtmipigrgqrelivgdrqtgktsiavstiinqvrinqqilskn
avisiyvsigqrcsnvarihrllqsygalryttvmaataaepaglqylapyagvtmgeyf
mnrgrhclcvyddlskqavayrqislllrrppgreaypgdvfylhsrlleraamlspgkg
ggsvtalpivetlsndvtayivtnvisitdgqiyldtklftggqrpavniglsvsrvgss
aqnaamkgvagklkgilaeyrklaadvqtipmirgarfvalfnqkqpsyfmnaivslyac
lngylddvkvqyvkfyeyllvhrdlgimygtaknkffymyvqelnylirfftlnspilhg
eleemlkqhthlflqhyqskmnaiksekdvkalknllysckrav

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f5dB (B:)
aatapagasttsstssaqksffkttemigyvhsidgtiatlipapgnpgvayntiiqiqv
spttfaaglvfnlekdgrigiilmdnitevqsgqkvmatgqllhipvgagvlgkvvnplg
hevpvglvtrsrrlldstlgkvdtgapnivsrspvnynlltgfkavdtmipigrgqreli
vgdrqtgktsiavstiinqvrinqqilsknavisiyvsigqrcsnvarihrllqsygalr
yttvmaataaepaglqylapyagvtmgeyfmnrgrhclcvyddlskqavayrqislllrr
ppgreaypgdvfylhsrlleraamlspgkgggsvtalpivetlsndvtayivtnvisitd
gqiyldtklftggqrpavniglsvsrvgssaqnaamkgvagklkgilaeyrklaadsvgg
qqvqtipmirgarfvalfnqkqpsyfmnaivslyaclngylddvkvqyvkfyeyllvhrd
lgimygtaknkffymyvqelnylirfftlnspilhgeleemlkqhthlflqhyqskmnai
ksekdvkalknllysckrav

    Sequence, based on observed residues (ATOM records):
    >6f5dB (B:)
fkttemigyvhsidgtiatlipapgnpgvayntiiqiqvspttfaaglvfnlekdgrigi
ilmdnitevqsgqkvmatgqllhipvgagvlgkvvnplghevpvglstlgkvdtgapniv
srspvnynlltgfkavdtmipigrgqrelivgdrqtgktsiavstiinqvrinqqilskn
avisiyvsigqrcsnvarihrllqsygalryttvmaataaepaglqylapyagvtmgeyf
mnrgrhclcvyddlskqavayrqislllrrppgreaypgdvfylhsrlleraamlspgkg
ggsvtalpivetlsndvtayivtnvisitdgqiyldtklftggqrpavniglsvsrvgss
aqnaamkgvagklkgilaeyrklaqqvqtipmirgarfvalfnqkqpsyfmnaivslyac
lngylddvkvqyvkfyeyllvhrdlgimygtaknkffymyvqelnylirfftlnspilhg
eleemlkqhthlflqhyqskmnaiksekdvkalknllysckrav

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6f5dC (C:)
aatapagasttsstssaqksffkttemigyvhsidgtiatlipapgnpgvayntiiqiqv
spttfaaglvfnlekdgrigiilmdnitevqsgqkvmatgqllhipvgagvlgkvvnplg
hevpvglvtrsrrlldstlgkvdtgapnivsrspvnynlltgfkavdtmipigrgqreli
vgdrqtgktsiavstiinqvrinqqilsknavisiyvsigqrcsnvarihrllqsygalr
yttvmaataaepaglqylapyagvtmgeyfmnrgrhclcvyddlskqavayrqislllrr
ppgreaypgdvfylhsrlleraamlspgkgggsvtalpivetlsndvtayivtnvisitd
gqiyldtklftggqrpavniglsvsrvgssaqnaamkgvagklkgilaeyrklaadsvgg
qqvqtipmirgarfvalfnqkqpsyfmnaivslyaclngylddvkvqyvkfyeyllvhrd
lgimygtaknkffymyvqelnylirfftlnspilhgeleemlkqhthlflqhyqskmnai
ksekdvkalknllysckrav

    Sequence, based on observed residues (ATOM records):
    >6f5dC (C:)
fkttemigyvhsidgtiatlipapgnpgvayntiiqiqvspttfaaglvfnlekdgrigi
ilmdnitevqsgqkvmatgqllhipvgagvlgkvvnplghevpvstlgkvdtgapnivsr
spvnynlltgfkavdtmipigrgqrelivgdrqtgktsiavstiinqvrinqqilsknav
isiyvsigqrcsnvarihrllqsygalryttvmaataaepaglqylapyagvtmgeyfmn
rgrhclcvyddlskqavayrqislllrrppgreaypgdvfylhsrlleraamlspgkggg
svtalpivetlsndvtayivtnvisitdgqiyldtklftggqrpavniglsvsrvgssaq
naamkgvagklkgilaeyrklaadqtipmirgarfvalfnqkqpsyfmnaivslyaclng
ylddvkvqyvkfyeyllvhrdlgimygtaknkffymyvqelnylirfftlnspilhgele
emlkqhthlflqhyqskmnaiksekdvkalknllysckrav

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6f5dD (D:)
astapvadhkgrvghvsqvigavvdvhfadgvppvltaldvvdklgrdepltleivqhld
ahtgrciamqttdllklkakvvstggnisvpvgretlgrifnvlgdaidqrgpvgeklrm
pihavapkladqaaedavlttgikvidlilpyckggkiglfggagvgktviimelinnva
kghggfsvfagvgertregtdlylemmqskvidlkgeskcvlvygqmneppgararvaqs
altmaeyfrdvegqdvllfidnifrftqansevsallgripaavgyqptlaedlgqlqer
itsttkgsitsvqavyvpadditdpapattfshldattvldravaesgiypavnplecas
rimdpdvisvdhynvaqdvvqmltkyrelqdiiavlgidelseedklivdrarklvkfls
qpfqvaevftgmtghyvqlddtidsfsgllmgtydqvpemafymvgginsvlekakkmae
eaaelekmrrarvaqass

    Sequence, based on observed residues (ATOM records):
    >6f5dD (D:)
dhkgrvghvsqvigavvdvhfadgvppvltaldvvdklgrdepltleivqhldahtgrci
amqttdllklkakvvstggnisvpvgretlgrifnvlgdaidqrgpvgeklrmpihavap
kladqaaedavlttgikvidlilpyckggkiglfggagvgktviimelinnvakghggfs
vfagvgertregtdlylemmqskvidlkgeskcvlvygqmneppgararvaqsaltmaey
frdvegqdvllfidnifrftqansevsallgripaavgyqptlaedlgqlqeritsttkg
sitsvqavyvpadditdpapattfshldattvldravaesgiypavnplecasrimdpdv
isvdhynvaqdvvqmltkyrelqdiiavlgidelseedklivdrarklvkflsqpfqvae
vftgmtghyvqlddtidsfsgllmgtydqvpemafymvgginsvlekakkmaeeaaelek
m

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6f5dE (E:)
astapvadhkgrvghvsqvigavvdvhfadgvppvltaldvvdklgrdepltleivqhld
ahtgrciamqttdllklkakvvstggnisvpvgretlgrifnvlgdaidqrgpvgeklrm
pihavapkladqaaedavlttgikvidlilpyckggkiglfggagvgktviimelinnva
kghggfsvfagvgertregtdlylemmqskvidlkgeskcvlvygqmneppgararvaqs
altmaeyfrdvegqdvllfidnifrftqansevsallgripaavgyqptlaedlgqlqer
itsttkgsitsvqavyvpadditdpapattfshldattvldravaesgiypavnplecas
rimdpdvisvdhynvaqdvvqmltkyrelqdiiavlgidelseedklivdrarklvkfls
qpfqvaevftgmtghyvqlddtidsfsgllmgtydqvpemafymvgginsvlekakkmae
eaaelekmrrarvaqass

    Sequence, based on observed residues (ATOM records):
    >6f5dE (E:)
vadhkgrvghvsqvigavvdvhfadgvppvltaldvvdklgrdepltleivqhldahtgr
ciamqttdllklkakvvstggnisvpvgretlgrifnvlgdaidqrgpvgeklrmpihav
apkladqaaedavlttgikvidlilpyckggkiglfggagvgktviimelinnvakghgg
fsvfagvgertregtdlylemmqskvidlkgeskcvlvygqmneppgararvaqsaltma
eyfrdvegqdvllfidnifrftqansevsallgripaavgyqptlaedlgqlqeritstt
kgsitsvqavyvpadditdpapattfshldattvldravaesgiypavnplecasrimdp
dvisvdhynvaqdvvqmltkyrelqdiiavlgidelseedklivdrarklvkflsqpfqv
aevftgmtghyvqlddtidsfsgllmgtydqvpemafymvgginsvlekakkmaeeaael
ekmrrar

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6f5dF (F:)
astapvadhkgrvghvsqvigavvdvhfadgvppvltaldvvdklgrdepltleivqhld
ahtgrciamqttdllklkakvvstggnisvpvgretlgrifnvlgdaidqrgpvgeklrm
pihavapkladqaaedavlttgikvidlilpyckggkiglfggagvgktviimelinnva
kghggfsvfagvgertregtdlylemmqskvidlkgeskcvlvygqmneppgararvaqs
altmaeyfrdvegqdvllfidnifrftqansevsallgripaavgyqptlaedlgqlqer
itsttkgsitsvqavyvpadditdpapattfshldattvldravaesgiypavnplecas
rimdpdvisvdhynvaqdvvqmltkyrelqdiiavlgidelseedklivdrarklvkfls
qpfqvaevftgmtghyvqlddtidsfsgllmgtydqvpemafymvgginsvlekakkmae
eaaelekmrrarvaqass

    Sequence, based on observed residues (ATOM records):
    >6f5dF (F:)
adhkgrvghvsqvigavvdvhfadgvppvltaldvvdklgrdepltleivqhldahtgrc
iamqttdllklkakvvstggnisvpvgretlgrifnvlgdaidqrgpvgeklrmpihava
pkladqaaedavlttgikvidlilpyckggkiglfggagvgktviimelinnvakghggf
svfagvgertregtdlylemmqskvidlkgeskcvlvygqmneppgararvaqsaltmae
yfrdvegqdvllfidnifrftqansevsallgripaavgyqptlaedlgqlqeritsttk
gsitsvqavyvpadditdpapattfshldattvldravaesgiypavnplecasrimdpd
visvdhynvaqdvvqmltkyrelqdiiavlgidelseedklivdrarklvkflsqpfqva
evftgmtghyvqlddtidsfsgllmgtydqvpemafymvgginsvlekakkmaeeaaele
kmrrarva

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6f5dG (G:)
sgklrlykeklegynrfysivktikmvtlakyraaqgrirtrdfslrytelafskpqasr
davaaaknalvyipittnrgscgalnsnivrcidsvvsskmvlmpvgkrgidsfsklypd
efrygiindmkesmhfgyatfvienayevskdadryqvifnrfvsagvqrnavynipsye
kwkedladaassdnqknrylfanalqneeeqlirdffdfhaalavlnavgenelseqaar
lvavegqltnisslqqrtsslynktrqfgitaalieilsamsslegnamkgvrrnkfweg
avtk

    Sequence, based on observed residues (ATOM records):
    >6f5dG (G:)
gklrlykeklegynrfysivktikmvtlakyraaqgrirtrdfslrytelafskpqaakn
alvyipittnrgscgalnsnivrcidsvvsskmvlmpvgkrgidsfsklypdefrygiin
dmkesmhfgyatfvienayevskdadryqvifnrfvsagvqrnavynipsyekwkedlad
aassdnqknrylfanalqneeeqlirdffdfhaalavlnavgenelseqaarlvavegql
tnisslqqrtsslynktrqfgitaalieilsamssle

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6f5dH (H:)
qsaphdlpegfefmehkvvnkdihaphenletlrltltrqdefllreepvkcvtvtgtng
eygiypghaykivqlnpspltveytdgttkkyfvsggfahinnegscdvntvectllddl
dlaiaekelaaqqaalgsakddkaksvveirisvieaviaalkhh

    Sequence, based on observed residues (ATOM records):
    >6f5dH (H:)
hdlpegfefmehtlrltltrqdefllreepvkcvtvtgtngeygiypghaykivqlnpsp
ltveytdgttkkyfvsggfahinnegscdvntvectllddldlaiaekelaaqqaalgsa
kddkaksvveirisvieaviaalkhh

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6f5dI (I:)
ssswrdhgisylkylnvctetlhstvkesrrakyerwskpcytaqrpdgaggqetidkvp
ihtkdy

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6f5dJ (J:)
aatsaakkydlfgyevdtntapwiekikkckyydeagevlvnmnvsncppdiatynatlq
ciyqspskqstpvdneskfcammdlleemqhrnrlkpneeswtwvmkecvksgqfrlgyc
iqqvmeteckgcpadlvkaneanaqkaktegkehpghlsqqaglfdvkve

    Sequence, based on observed residues (ATOM records):
    >6f5dJ (J:)
akkydlfgyevdtntapwiekikkckyydeagevlvnmnvsncppdiatynatlqciyqs
pskqstpvdneskfcammdlleemqhrnrlkpneeswtwvmkecvksgqfrlgyciqqvm
eteckgcpadlvkaneanaqkaktegkehpghlsqqaglfdvkv

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6f5dK (K:)
aatsaakkydlfgyevdtntapwiekikkckyydeagevlvnmnvsncppdiatynatlq
ciyqspskqstpvdneskfcammdlleemqhrnrlkpneeswtwvmkecvksgqfrlgyc
iqqvmeteckgcpadlvkaneanaqkaktegkehpghlsqqaglfdvkve

    Sequence, based on observed residues (ATOM records):
    >6f5dK (K:)
akkydlfgyevdtntapwiekikkckyydeagevlvnmnvsncppdiatynatlqciyqs
pskqstpvdneskfcammdlleemqhrnrlkpneeswtwvmkecvksgqfrlgyciqqvm
eteckgcpadlvkaneanaqkaktegkehpghlsqqaglfdv

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6f5dL (L:)
aatsaakkydlfgyevdtntapwiekikkckyydeagevlvnmnvsncppdiatynatlq
ciyqspskqstpvdneskfcammdlleemqhrnrlkpneeswtwvmkecvksgqfrlgyc
iqqvmeteckgcpadlvkaneanaqkaktegkehpghlsqqaglfdvkve

    Sequence, based on observed residues (ATOM records):
    >6f5dL (L:)
akkydlfgyevdtntapwiekikkckyydeagevlvnmnvsncppdiatynatlqciyqs
pskqstpvdneskfcammdlleemqhrnrlkpneeswtwvmkecvksgqfrlgyciqqvm
eteckgcpadlvkaneanaqkaktegkehpghlsqqaglfdvkve