PDB entry 6f4w
View 6f4w on RCSB PDB site
Description: Crystal structure of H. pylori purine nucleoside phosphorylase in complex with formycin A
Class: hydrolase
Keywords: Purine nucleoside phosphorylase, H. pylori, formycin A, HYDROLASE
Deposited on
2017-11-30, released
2018-02-14
The last revision prior to the SCOPe 2.07 freeze date was dated
2018-02-21, with a file datestamp of
2018-02-16.
Experiment type: XRAY
Resolution: 2.29 Å
R-factor: N/A
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Purine nucleoside phosphorylase deoD-type
Species: Helicobacter pylori [TaxId:210]
Gene: deoD, HP_1178
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6f4wa_ - Chain 'B':
Compound: Purine nucleoside phosphorylase deoD-type
Species: Helicobacter pylori [TaxId:210]
Gene: deoD, HP_1178
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6f4wb_ - Chain 'C':
Compound: Purine nucleoside phosphorylase deoD-type
Species: Helicobacter pylori [TaxId:210]
Gene: deoD, HP_1178
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6f4wc_ - Chain 'D':
Compound: Purine nucleoside phosphorylase deoD-type
Species: Helicobacter pylori [TaxId:210]
Gene: deoD, HP_1178
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6f4wd_ - Chain 'E':
Compound: Purine nucleoside phosphorylase deoD-type
Species: Helicobacter pylori [TaxId:210]
Gene: deoD, HP_1178
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6f4we_ - Chain 'F':
Compound: Purine nucleoside phosphorylase deoD-type
Species: Helicobacter pylori [TaxId:210]
Gene: deoD, HP_1178
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6f4wf_ - Heterogens: FMC, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>6f4wA (A:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>6f4wB (B:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>6f4wC (C:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>6f4wD (D:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>6f4wE (E:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>6f4wF (F:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms