PDB entry 6f4t

View 6f4t on RCSB PDB site
Description: human jmjd5 (w414c) in complex with mn(ii), nog and rccd1 (139-143) (complex-5)
Deposited on 2017-11-30, released 2018-04-04
The last revision was dated 2018-04-04, with a file datestamp of 2018-03-29.
Experiment type: XRAY
Resolution: 1.22 Å
R-factor: N/A
AEROSPACI score: 0.64 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: JmjC domain-containing protein 5
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM8, JMJD5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8N371 (21-254)
      • expression tag (20)
      • engineered mutation (55)
      • engineered mutation (70)
      • engineered mutation (252)
  • Chain 'B':
    Compound: RCC1 domain-containing protein 1
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MN, OGA, GOL, TRS, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f4tA (A:)
hhhhhhssgvdlgtenlyfqstvprlhrpslqhfreqflvpgrpvilkgvadhwpamqkw
sleyiqeiagartvpvevgsrytdeewsqtlmtvnefiskyivneprdvgylaqhqlfdq
ipelkqdisipdycslgdgeeeeitinawfgpqgtisplhqdpqqnflvqvmgrkyirly
spqesgalyphdthllhntsqvdvenpdlekfpkfakapflscilspgeilfipvkywhy
vraldlsfsvsfcws

    Sequence, based on observed residues (ATOM records):
    >6f4tA (A:)
stvprlhrpslqhfreqflvpgrpvilkgvadhwpamqkwsleyiqeiagartvpvevgs
rytdeewsqtlmtvnefiskyivneprdvgylaqhqlfdqipelkqdisipdycslgdge
eeeitinawfgpqgtisplhqdpqqnflvqvmgrkyirlyspqesgalyphdthllhnts
qvdvenpdlekfpkfakapflscilspgeilfipvkywhyvraldlsfsvsfcws

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f4tB (B:)
caray

    Sequence, based on observed residues (ATOM records):
    >6f4tB (B:)
car