PDB entry 6f4s

View 6f4s on RCSB PDB site
Description: human jmjd5 (n308c) in complex with mn(ii), 2og and rccd1 (139-143) (complex-4)
Deposited on 2017-11-30, released 2018-04-04
The last revision was dated 2018-04-04, with a file datestamp of 2018-03-29.
Experiment type: XRAY
Resolution: 1.46 Å
R-factor: N/A
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: JmjC domain-containing protein 5
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM8, JMJD5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8N371 (21-254)
      • expression tag (20)
      • engineered mutation (55)
      • engineered mutation (70)
      • engineered mutation (146)
  • Chain 'B':
    Compound: RCC1 domain-containing protein 1
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MN, AKG, TRS, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f4sA (A:)
hhhhhhssgvdlgtenlyfqstvprlhrpslqhfreqflvpgrpvilkgvadhwpamqkw
sleyiqeiagartvpvevgsrytdeewsqtlmtvnefiskyivneprdvgylaqhqlfdq
ipelkqdisipdycslgdgeeeeiticawfgpqgtisplhqdpqqnflvqvmgrkyirly
spqesgalyphdthllhntsqvdvenpdlekfpkfakapflscilspgeilfipvkywhy
vraldlsfsvsfwws

    Sequence, based on observed residues (ATOM records):
    >6f4sA (A:)
stvprlhrpslqhfreqflvpgrpvilkgvadhwpamqkwsleyiqeiagartvpvevgs
rytdeewsqtlmtvnefiskyivneprdvgylaqhqlfdqipelkqdisipdycslgdge
eeeiticawfgpqgtisplhqdpqqnflvqvmgrkyirlyspqesgalyphdthllhnts
qvdvenpdlekfpkfakapflscilspgeilfipvkywhyvraldlsfsvsfwws

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6f4sB (B:)
caray