PDB entry 6f4r

View 6f4r on RCSB PDB site
Description: human jmjd5 (n308c) in complex with mn(ii), nog and rccd1 (139-143) (complex-3)
Deposited on 2017-11-30, released 2018-04-04
The last revision was dated 2019-06-12, with a file datestamp of 2019-06-07.
Experiment type: XRAY
Resolution: 1.3 Å
R-factor: N/A
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: JmjC domain-containing protein 5
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM8, JMJD5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8N371 (21-254)
      • expression tag (20)
      • engineered mutation (55)
      • engineered mutation (70)
      • engineered mutation (133)
      • engineered mutation (146)
      • engineered mutation (222)
  • Chain 'B':
    Compound: RCC1 domain-containing protein 1
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MN, OGA, TRS, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f4rA (A:)
hhhhhhssgvdlgtenlyfqstvprlhrpslqhfreqflvpgrpvilkgvadhwpamqkw
sleyiqeiagartvpvevgsrytdeewsqtlmtvnefiskyivneprdvgylaqhqlfdq
ipelkqdisipdyaslgdgeeeeiticawfgpqgtisplhqdpqqnflvqvmgrkyirly
spqesgalyphdthllhntsqvdvenpdlekfpkfakapflsailspgeilfipvkywhy
vraldlsfsvsfwws

    Sequence, based on observed residues (ATOM records):
    >6f4rA (A:)
stvprlhrpslqhfreqflvpgrpvilkgvadhwpamqkwsleyiqeiagartvpvevgs
rytdeewsqtlmtvnefiskyivneprdvgylaqhqlfdqipelkqdisipdyaslgdge
eeeiticawfgpqgtisplhqdpqqnflvqvmgrkyirlyspqesgalyphdthllhnts
qvdvenpdlekfpkfakapflsailspgeilfipvkywhyvraldlsfsvsfwws

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f4rB (B:)
caray

    Sequence, based on observed residues (ATOM records):
    >6f4rB (B:)
cara