PDB entry 6f4q

View 6f4q on RCSB PDB site
Description: human jmjd5 (q275c) in complex with mn(ii), nog and rps6-a138c (129- 144) (complex-2)
Deposited on 2017-11-29, released 2018-04-04
The last revision was dated 2018-04-04, with a file datestamp of 2018-03-29.
Experiment type: XRAY
Resolution: 1.12 Å
R-factor: N/A
AEROSPACI score: 0.71 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: JmjC domain-containing protein 5
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM8, JMJD5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8N371 (21-254)
      • expression tag (20)
      • engineered mutation (55)
      • engineered mutation (70)
      • engineered mutation (113)
      • engineered mutation (133)
      • engineered mutation (222)
  • Chain 'B':
    Compound: 40s ribosomal protein s6
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62753
      • engineered mutation (9)
  • Heterogens: MN, OGA, TRS, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f4qA (A:)
hhhhhhssgvdlgtenlyfqstvprlhrpslqhfreqflvpgrpvilkgvadhwpamqkw
sleyiqeiagartvpvevgsrytdeewsqtlmtvnefiskyivneprdvgylachqlfdq
ipelkqdisipdyaslgdgeeeeitinawfgpqgtisplhqdpqqnflvqvmgrkyirly
spqesgalyphdthllhntsqvdvenpdlekfpkfakapflsailspgeilfipvkywhy
vraldlsfsvsfwws

    Sequence, based on observed residues (ATOM records):
    >6f4qA (A:)
stvprlhrpslqhfreqflvpgrpvilkgvadhwpamqkwsleyiqeiagartvpvevgs
rytdeewsqtlmtvnefiskyivneprdvgylachqlfdqipelkqdisipdyaslgdge
eeeitinawfgpqgtisplhqdpqqnflvqvmgrkyirlyspqesgalyphdthllhnts
qvdvenpdlekfpkfakapflsailspgeilfipvkywhyvraldlsfsvsfwws

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f4qB (B:)
vprrlgpkrcsrirkl

    Sequence, based on observed residues (ATOM records):
    >6f4qB (B:)
rc