PDB entry 6f4a

View 6f4a on RCSB PDB site
Description: yeast mitochondrial rna degradosome complex mtexo
Deposited on 2017-11-29, released 2018-01-17
The last revision was dated 2018-01-17, with a file datestamp of 2018-01-12.
Experiment type: XRAY
Resolution: 3.55 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Exoribonuclease II, mitochondrial
    Species: Candida glabrata [TaxId:5478]
    Gene: AO440_004157
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0W0CXR7
      • conflict (408)
      • conflict (813)
  • Chain 'B':
    Compound: Suv3 helicase
    Species: Candida glabrata [TaxId:5478]
    Gene: SUV3, CAGL0L12386g
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: RNA (5'-r(p*ap*gp*ap*up*ap*c)-3')
    Species: Escherichia coli [TaxId:562]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f4aA (A:)
    mfiinsdfhrgnmeqyqkaqklsfdpaellrtslnvgdivllkqctseltmcvnlpqstt
    dprytfakkdgtlvyamknsvilripkdlpeevnqllkresnhpyqkigtiknssnetei
    lpvltrqlivsftlatftkfawtqlpivlkklelihrylqdsrgskhvnfmslvriiknl
    nikeatdaingdayvrkvidesmsvvnksidpttllatywgvreqqqnnlwgsvytntal
    lspttvavlplkkahlfyqevitrlesndyqeikafaklvndkdyhsiakrydyirtlln
    dyaagnieenavlttiiskifrhidmyrdqdvtrslcgkllveispqsnssnfilgnwdl
    nipkssgissveqklydtamptivsdtdrydfgdmpvfcidsedaheindgisieeldgv
    rsrihihiadpaglfpesfdytksgisddvlrvslkrafttylpdlvvpmlpksfcnrad
    lgkhdrktetisfsfelvnkedgglhvdydtfqvrlgivsnfpkvtydkvdsilngddns
    lpskqkkqlellhtlatkllhkrihddnavvfgdgfnkglvslspdddgelciptfydqs
    qtkstllvsefmiltnklcaaffqenkipgvyrcynglnlgnqakaqfellkeniklgkl
    pslkditkissqlsssfyspfplphkmigntayltvtspmrrgpdlinhlqlhrflkklp
    lcfkqeyldqyvwsfqaradilkifqrhsstywtlkhleqsgtkthdvivtsvpqngtvn
    clfpeysyargtlkldpamkkiprigdtirhckvesihpldgiltlthvnrk
    

    Sequence, based on observed residues (ATOM records):
    >6f4aA (A:)
    lsfdpaellrtslnvgdivllkqctseltmcvnlpqsttdprytfakkdgtlvyamknsv
    ilripkdpvltrqlivsftlatftkfawtqlpivlkklelihrylqdsrgskhvnfmslv
    riiknlnikeatingdayvrkvidesmsvnksidpttllatywgvreqqqnnlwgsvytn
    tallspttvavlplkkahlfyqevitrlesndyqeikafaklvndkdyhsiakrydyirt
    llndyaagnieenavlttiiskifrhidmyrdqdvtrslcgkllveispqfilgnwdlni
    pksgissveqklydtampvsdtdrydfgdmcidsedaheindiadpaglfpesfdytksg
    isddvlrvslkrafttylpdlvvpmlpksfcnradlgdrktetisglhvdydlgivsnfp
    kvtydkvdsikqkkqlellhtlatkllhkrihddnavfnkciptfydqtkstllvsefmi
    ltnklcaaffqenkipgvyrcnqakaqfellkekditkissqlsssfyspfplphkmign
    tayltvtspmrrgpdlinhlqlhrflkklplcfkqeyldqyvwsfqaradilkifqrhss
    tywtlkhleqsngtvnclfpysyargprigdtkvesihpldgil
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f4aB (B:)
    miyttdkefkknlenalahvystqiensapdqvefrkvawlrlkdmlynqlldknlpaki
    ngydpglmetisptqpqhiiphlvkmnkidqliwkkitgktegvtkyeqfqyllssyydc
    ilnqeiipsmlntgtddsvhsvdfsnpaewfpearkirrhiimhvgptnsgktfrslqkl
    kaadrgyyagplrllarevyekfkhenvrcnlltgeevikdldemgneanltsgtiemip
    lnqnfdvvvldeiqmmadldrgwawtnallgakakevhccgeastiplikkivemtgdkl
    tineyermgklvveeealtkgyhslkkgdcvvafskkaildlkleiekktelkaaviygs
    lppetrvkqanlfnsgefdiliasdaigmglnlsidrvvfttskkfdgrdmvdmtssaik
    qiggragrfkqnihdngelpvgyitavkpnvlkavreainapieyltsattwptdeicth
    vmtrfmpgttcktlletiaadieqssnklfqicdlkarmsaieiidsmeditfsdklrls
    naplkdfplvkaafkkfcdtiarghtrgllsyrfpfdilnlkyiytekhgleeyealyni
    imlffwlsnrypnyfidqesaselknfcemiifekidhlkrnpy
    

    Sequence, based on observed residues (ATOM records):
    >6f4aB (B:)
    efkknlenalahvystqiensapdqvefrkvawlrlkdmlynqlldknlpakingydpgl
    metisptqpqhiiphlvkmnkikyeqfqyllssyydcilnqeiipsmlfsnpaewfpear
    kirrhiimhvgptnsgktfrslqklkaadyyagplrllarevyekfkhenvrcnlltgee
    viltsgtiemiplnqnfdvvvldeiqmmadldrgwawtnallgakakevhccgeastipl
    ikkivemtgdkltineyermgklvveeealyhslkkgdcvvafskkaildlkleiekkte
    lviygslppetrvkqanlfnsgefdiliasdaigmglnlsidrvvfttsmvdmtssaikq
    iggragpvgyitavkpnvlkavreainapieyltsattwptdeicthvmttlletiaadi
    eqnklfqicdlkarmsaieiitfsdklrlsnaplkdplvkaafkkfcdtiargsyrpfdi
    lleeyealyniimlffwlsnrypnfidqesaselknfcemiifekidhlkrnpy
    

  • Chain 'C':
    No sequence available.