PDB entry 6f3t

View 6f3t on RCSB PDB site
Description: crystal structure of the human taf5-taf6-taf9 complex
Deposited on 2017-11-28, released 2018-12-05
The last revision was dated 2018-12-19, with a file datestamp of 2018-12-14.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcription initiation factor TFIID subunit 5
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF5, TAF2D
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Transcription initiation factor TFIID subunit 5
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF5, TAF2D
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Transcription initiation factor TFIID subunit 5
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF5, TAF2D
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Transcription initiation factor TFIID subunit 5
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF5, TAF2D
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: transcription initiation factor tfiid subunit 6
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF6, TAF2E, TAFII70
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49848 (Start-87)
      • expression tag (88-93)
  • Chain 'F':
    Compound: Transcription initiation factor TFIID subunit 9
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF9, TAF2G, TAFII31
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: transcription initiation factor tfiid subunit 6
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF6, TAF2E, TAFII70
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49848 (Start-87)
      • expression tag (88-93)
  • Chain 'H':
    Compound: Transcription initiation factor TFIID subunit 9
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF9, TAF2G, TAFII31
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: transcription initiation factor tfiid subunit 6
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF6, TAF2E, TAFII70
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49848 (0-87)
      • expression tag (88-93)
  • Chain 'J':
    Compound: Transcription initiation factor TFIID subunit 9
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF9, TAF2G, TAFII31
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: transcription initiation factor tfiid subunit 6
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF6, TAF2E, TAFII70
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49848 (Start-87)
      • expression tag (88-93)
  • Chain 'L':
    Compound: Transcription initiation factor TFIID subunit 9
    Species: Homo sapiens [TaxId:9606]
    Gene: TAF9, TAF2G, TAFII31
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f3tA (A:)
gdqpdvsavlsaynqqgdptmyeeyysglkhfiecsldchraelsqlfyplfvhmylelv
ynqheneaksffekfhgdqecyyqddlrvlssltkkehmkgnetmldfrtskfvlrisrd
syqllkrhlqekqnnqiwnivqehlyidifdgmprskqqidamvgslageakreankskv
ffgllkepeievplddedeegeneegkskkkkpkkdsigskskkqdpnappqnriplpel
kdsdkldkimnmkettkrvrlgpdclpsicfytflnayqgltavdvtddssliaggfads
tvrvwsvtpkklrsvkqasdlslidkesddvlerimdektaselkilyghsgpvygasfs
pdrnyllsssedgtvrlwslqtftclvgykghnypvwdtqfspygyyfvsgghdrvarlw
atdhyqplrifaghladvnctrfhpnsnyvatgsadrtvrlwdvlngncvriftghkgpi
hsltfspngrflatgatdgrvllwdighglmvgelkghtdtvcslrfsrdgeilasgsmd
ntvrlwdaikafedletddfttatghinlpensqelllgtymtkstpvvhlhftrrnlvl
aagayspq

    Sequence, based on observed residues (ATOM records):
    >6f3tA (A:)
qqgdptmyeeyysglkhfiecsldchraelsqlfyplfvhmylelvynqheneaksffek
fhgdqecyyqddlrvlssltkkehmkgnetmldfrtskfvlrisrdsyqllkrhlqekqn
nqiwnivqehlyidifdgmprskqqidamvgslageakreankskvffgllkepqdpnap
pqnriplpelkdsdkldkimnmkettkrvrlgpdclpsicfytflnayqgltavdvtdds
sliaggfadstvrvwsvtpkklrsvkqasdlslidkesddvlerimdektaselkilygh
sgpvygasfspdrnyllsssedgtvrlwslqtftclvgykghnypvwdtqfspygyyfvs
gghdrvarlwatdhyqplrifaghladvnctrfhpnsnyvatgsadrtvrlwdvlngncv
riftghkgpihsltfspngrflatgatdgrvllwdighglmvgelkghtdtvcslrfsrd
geilasgsmdntvrlwdaikafedltatghinlpensqelllgtymtkstpvvhlhftrr
nlvlaagayspq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f3tB (B:)
gdqpdvsavlsaynqqgdptmyeeyysglkhfiecsldchraelsqlfyplfvhmylelv
ynqheneaksffekfhgdqecyyqddlrvlssltkkehmkgnetmldfrtskfvlrisrd
syqllkrhlqekqnnqiwnivqehlyidifdgmprskqqidamvgslageakreankskv
ffgllkepeievplddedeegeneegkskkkkpkkdsigskskkqdpnappqnriplpel
kdsdkldkimnmkettkrvrlgpdclpsicfytflnayqgltavdvtddssliaggfads
tvrvwsvtpkklrsvkqasdlslidkesddvlerimdektaselkilyghsgpvygasfs
pdrnyllsssedgtvrlwslqtftclvgykghnypvwdtqfspygyyfvsgghdrvarlw
atdhyqplrifaghladvnctrfhpnsnyvatgsadrtvrlwdvlngncvriftghkgpi
hsltfspngrflatgatdgrvllwdighglmvgelkghtdtvcslrfsrdgeilasgsmd
ntvrlwdaikafedletddfttatghinlpensqelllgtymtkstpvvhlhftrrnlvl
aagayspq

    Sequence, based on observed residues (ATOM records):
    >6f3tB (B:)
gdptmyeeyysglkhfiecsldchraelsqlfyplfvhmylelvynqheneaksffekfh
gdqecyyqddlrvlssltkkehmkgnetmldfrtskfvlrisrdsyqllkrhlqekqnnq
iwnivqehlyidifdgmprskqqidamvgslageakreankskvffgllkepeqdpnapp
qnriplpelkdsdkldkimnmkettkrvrlgpdclpsicfytflnayqgltavdvtddss
liaggfadstvrvwsvtpkklrsvkqasdlslidkesddvlerimdektaselkilyghs
gpvygasfspdrnyllsssedgtvrlwslqtftclvgykghnypvwdtqfspygyyfvsg
ghdrvarlwatdhyqplrifaghladvnctrfhpnsnyvatgsadrtvrlwdvlngncvr
iftghkgpihsltfspngrflatgatdgrvllwdighglmvgelkghtdtvcslrfsrdg
eilasgsmdntvrlwdaikafedltatghinlpensqelllgtymtkstpvvhlhftrrn
lvlaagayspq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6f3tC (C:)
gdqpdvsavlsaynqqgdptmyeeyysglkhfiecsldchraelsqlfyplfvhmylelv
ynqheneaksffekfhgdqecyyqddlrvlssltkkehmkgnetmldfrtskfvlrisrd
syqllkrhlqekqnnqiwnivqehlyidifdgmprskqqidamvgslageakreankskv
ffgllkepeievplddedeegeneegkskkkkpkkdsigskskkqdpnappqnriplpel
kdsdkldkimnmkettkrvrlgpdclpsicfytflnayqgltavdvtddssliaggfads
tvrvwsvtpkklrsvkqasdlslidkesddvlerimdektaselkilyghsgpvygasfs
pdrnyllsssedgtvrlwslqtftclvgykghnypvwdtqfspygyyfvsgghdrvarlw
atdhyqplrifaghladvnctrfhpnsnyvatgsadrtvrlwdvlngncvriftghkgpi
hsltfspngrflatgatdgrvllwdighglmvgelkghtdtvcslrfsrdgeilasgsmd
ntvrlwdaikafedletddfttatghinlpensqelllgtymtkstpvvhlhftrrnlvl
aagayspq

    Sequence, based on observed residues (ATOM records):
    >6f3tC (C:)
gdptmyeeyysglkhfiecsldchraelsqlfyplfvhmylelvynqheneaksffekfh
gdqecyyqddlrvlssltkkehmkgnetmldfrtskfvlrisrdsyqllkrhlqekqnnq
iwnivqehlyidifdgmprskqqidamvgslageakreankskvffgllkepqdpnappq
nriplpelkdsdkldkimnmkettkrvrlgpdclpsicfytflnayqgltavdvtddssl
iaggfadstvrvwsvtpkklrsvkqasdlslidkesddvlerimdektaselkilyghsg
pvygasfspdrnyllsssedgtvrlwslqtftclvgykghnypvwdtqfspygyyfvsgg
hdrvarlwatdhyqplrifaghladvnctrfhpnsnyvatgsadrtvrlwdvlngncvri
ftghkgpihsltfspngrflatgatdgrvllwdighglmvgelkghtdtvcslrfsrdge
ilasgsmdntvrlwdaikafedletatghinlpensqelllgtymtkstpvvhlhftrrn
lvlaagayspq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6f3tD (D:)
gdqpdvsavlsaynqqgdptmyeeyysglkhfiecsldchraelsqlfyplfvhmylelv
ynqheneaksffekfhgdqecyyqddlrvlssltkkehmkgnetmldfrtskfvlrisrd
syqllkrhlqekqnnqiwnivqehlyidifdgmprskqqidamvgslageakreankskv
ffgllkepeievplddedeegeneegkskkkkpkkdsigskskkqdpnappqnriplpel
kdsdkldkimnmkettkrvrlgpdclpsicfytflnayqgltavdvtddssliaggfads
tvrvwsvtpkklrsvkqasdlslidkesddvlerimdektaselkilyghsgpvygasfs
pdrnyllsssedgtvrlwslqtftclvgykghnypvwdtqfspygyyfvsgghdrvarlw
atdhyqplrifaghladvnctrfhpnsnyvatgsadrtvrlwdvlngncvriftghkgpi
hsltfspngrflatgatdgrvllwdighglmvgelkghtdtvcslrfsrdgeilasgsmd
ntvrlwdaikafedletddfttatghinlpensqelllgtymtkstpvvhlhftrrnlvl
aagayspq

    Sequence, based on observed residues (ATOM records):
    >6f3tD (D:)
gdptmyeeyysglkhfiecsldchraelsqlfyplfvhmylelvynqheneaksffekfh
gdqecyyqddlrvlssltkkehmkgnetmldfrtskfvlrisrdsyqllkrhlqekqnnq
iwnivqehlyidifdgmprskqqidamvgslageakreankskvffgllkepeqdpnapp
qnriplpelkdsdkldkimnmkettkrvrlgpdclpsicfytflnayqgltavdvtddss
liaggfadstvrvwsvtpkklrsvkqasdlslidkesddvlerimdektaselkilyghs
gpvygasfspdrnyllsssedgtvrlwslqtftclvgykghnypvwdtqfspygyyfvsg
ghdrvarlwatdhyqplrifaghladvnctrfhpnsnyvatgsadrtvrlwdvlngncvr
iftghkgpihsltfspngrflatgatdgrvllwdighglmvgelkghtdtvcslrfsrdg
eilasgsmdntvrlwdaikafedletghinlpensqelllgtymtkstpvvhlhftrrnl
vlaagayspq

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6f3tE (E:)
kklklsntvlpsesmkvvaesmgiaqiqeetcqlltdevsyrikeiaqdalkfmhmgkrq
klttsdidyalklknveplygfhaqefirlrrra

    Sequence, based on observed residues (ATOM records):
    >6f3tE (E:)
klklsntvlpsesmkvvaesmgiaqiqeetcqlltdevsyrikeiaqdalkfmhmgkrqk
lttsdidyalklknveplygfhaqefirlrrra

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6f3tF (F:)
ktaspksmpkdaqmmaqilkdmgiteyeprvinqmlefafryvttilddakiysshakka
tvdaddvrlaiqcradqsftsppprdflldiarqrnqtplplikpysgprlppdry

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6f3tG (G:)
kklklsntvlpsesmkvvaesmgiaqiqeetcqlltdevsyrikeiaqdalkfmhmgkrq
klttsdidyalklknveplygfhaqefirlrrra

    Sequence, based on observed residues (ATOM records):
    >6f3tG (G:)
lklsntvlpsesmkvvaesmgiaqiqeetcqlltdevsyrikeiaqdalkfmhmgkrqkl
ttsdidyalklknveplygfhaqefirlrrra

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6f3tH (H:)
ktaspksmpkdaqmmaqilkdmgiteyeprvinqmlefafryvttilddakiysshakka
tvdaddvrlaiqcradqsftsppprdflldiarqrnqtplplikpysgprlppdry

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6f3tI (I:)
kklklsntvlpsesmkvvaesmgiaqiqeetcqlltdevsyrikeiaqdalkfmhmgkrq
klttsdidyalklknveplygfhaqefirlrrra

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6f3tJ (J:)
ktaspksmpkdaqmmaqilkdmgiteyeprvinqmlefafryvttilddakiysshakka
tvdaddvrlaiqcradqsftsppprdflldiarqrnqtplplikpysgprlppdry

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6f3tK (K:)
kklklsntvlpsesmkvvaesmgiaqiqeetcqlltdevsyrikeiaqdalkfmhmgkrq
klttsdidyalklknveplygfhaqefirlrrra

    Sequence, based on observed residues (ATOM records):
    >6f3tK (K:)
klklsntvlpsesmkvvaesmgiaqiqeetcqlltdevsyrikeiaqdalkfmhmgkrqk
lttsdidyalklknveplygfhaqefirlrrra

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6f3tL (L:)
ktaspksmpkdaqmmaqilkdmgiteyeprvinqmlefafryvttilddakiysshakka
tvdaddvrlaiqcradqsftsppprdflldiarqrnqtplplikpysgprlppdry