PDB entry 6f3h

View 6f3h on RCSB PDB site
Description: crystal structure of dss1 exoribonuclease active site mutant d477n from candida glabrata
Deposited on 2017-11-28, released 2018-01-17
The last revision was dated 2018-01-17, with a file datestamp of 2018-01-12.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Exoribonuclease II, mitochondrial
    Species: Candida glabrata [TaxId:5478]
    Gene: CAGL0M07051g
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6FJE0
      • engineered mutation (408)
  • Chain 'B':
    Compound: Exoribonuclease II, mitochondrial
    Species: Candida glabrata [TaxId:5478]
    Gene: CAGL0M07051g
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6FJE0
      • engineered mutation (408)
  • Chain 'C':
    Compound: RNA (5'-r(p*ap*gp*ap*up*ap*c)-3')
    Species: Escherichia coli BL21(DE3) [TaxId:469008]
  • Chain 'D':
    Compound: RNA (5'-r(p*cp*ap*cp*up*gp*a)-3')
    Species: Escherichia coli BL21(DE3) [TaxId:469008]
  • Heterogens: MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f3hA (A:)
mfiinsdfhrgnmeqyqkaqklsfdpaellrtslnvgdivllkqctseltmcvnlpqstt
dprytfakkdgtlvyamknsvilripkdlpeevnqllkresnhpyqkigtiknssnetei
lpvltrqlivsftlatftkfawtqlpivlkklelihrylqdsrgskhvnfmslvriiknl
nikeatdaingdayvrkvidesmsvvnksidpttllatywgvreqqqnnlwgsvytntal
lspttvavlplkkahlfyqevitrlesndyqeikafaklvndkdyhsiakrydyirtlln
dyaagnieenavlttiiskifrhidmyrdqdvtrslcgkllveispqsnssnfilgnwdl
nipkssgissveqklydtamptivsdtdrydfgdmpvfcidsedaheindgisieeldgv
rsrihihiadpaglfpesfdytksgisddvlrvslkrafttylpdlvvpmlpksfcnrad
lgkhdrktetisfsfelvnkedgglhvdydtfqvrlgivsnfpkvtydkvdsilngddns
lpskqkkqlellhtlatkllhkrihddnavvfgdgfnkglvslspdddgelciptfydqs
qtkstllvsefmiltnklcaaffqenkipgvyrcynglnlgnqakaqfellkeniklgkl
pslkditkissqlsssfyspfplphkmigntayltvtspmrrgpdlinhlqlhrflkklp
lcfkqeyldqyvwsfqaradilkifqrhsstywtlkhleqsgtkthdvivtsvpqngtvn
clfpeysyargtlkldpamkkiprigdtirhckvesihpldgiltlthvnrk

    Sequence, based on observed residues (ATOM records):
    >6f3hA (A:)
klsfdpaellrtslnvgdivllkqctseltmcvnlpqsttdprytfakkdgtlvyamkns
vilripkpvltrqlivsftlatftkfawtqlpivlkklelihrylqdsrgskhvnfmslv
riiknlnikeatdaidayvrkvidesmsnksidpttllatywgvreqqqnnlwgsvytnt
allspttvavlplkkahlfyqevitrlesndyqeikafaklvndkdyhsiakrydyirtl
lndyaagnieenavlttiiskifrhidmyrdqdvtrslcgkllveispqsnssnfilgnw
dlnipksgissveqklydtamptivtdrydfgdmpvfcidsedaheindgisieeldgvr
srihihiadpaglfpesfdytksgisddvlrvslkrafttylpdlvvpmlpksfcnradl
gkhdrktetisfsfelvnkedgglhvdydtfqvrlgivsnfpkvtydkvdsilngddnsl
pskqkkqlellhtlatkllhkrihddnavvfgdgfnkglvslspddelciptfydqsqtk
stllvsefmiltnklcaaffqenkipgvyrcynglnlgnqakaqfellkeniklgklpsl
kditkissqlsssfyspfplphkmigntayltvtspmrrgpdlinhlqlhrflkklplcf
kqeyldqyvwsfqaradilkifqrhsstywtlkhleqsgkthdvivtsvpqngtvnclfp
eysyargtlkldpamiprigdtirhckvesihpldgiltlth

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f3hB (B:)
mfiinsdfhrgnmeqyqkaqklsfdpaellrtslnvgdivllkqctseltmcvnlpqstt
dprytfakkdgtlvyamknsvilripkdlpeevnqllkresnhpyqkigtiknssnetei
lpvltrqlivsftlatftkfawtqlpivlkklelihrylqdsrgskhvnfmslvriiknl
nikeatdaingdayvrkvidesmsvvnksidpttllatywgvreqqqnnlwgsvytntal
lspttvavlplkkahlfyqevitrlesndyqeikafaklvndkdyhsiakrydyirtlln
dyaagnieenavlttiiskifrhidmyrdqdvtrslcgkllveispqsnssnfilgnwdl
nipkssgissveqklydtamptivsdtdrydfgdmpvfcidsedaheindgisieeldgv
rsrihihiadpaglfpesfdytksgisddvlrvslkrafttylpdlvvpmlpksfcnrad
lgkhdrktetisfsfelvnkedgglhvdydtfqvrlgivsnfpkvtydkvdsilngddns
lpskqkkqlellhtlatkllhkrihddnavvfgdgfnkglvslspdddgelciptfydqs
qtkstllvsefmiltnklcaaffqenkipgvyrcynglnlgnqakaqfellkeniklgkl
pslkditkissqlsssfyspfplphkmigntayltvtspmrrgpdlinhlqlhrflkklp
lcfkqeyldqyvwsfqaradilkifqrhsstywtlkhleqsgtkthdvivtsvpqngtvn
clfpeysyargtlkldpamkkiprigdtirhckvesihpldgiltlthvnrk

    Sequence, based on observed residues (ATOM records):
    >6f3hB (B:)
hrgnmeqyqkaqklsfdpaellrtslnvgdivllkqctseltmcvnlpqsttdprytfak
kdgtlvyamknsvilripkdlpeevnqllkresnlpvltrqlivsftlatftkfawtqlp
ivlkklelihrylqdsrgskhvnfmslvriiknlnikeatdayvrkvidesmsvvnksid
pttllatywgvreqqqnnlwgsvytntallspttvavlplkkahlfyqevitrlesndyq
eikafaklvndkdyhsiakrydyirtllndyaagnieenavlttiiskifrhidmyrdqd
vtrslcgkllveispqsnssnfilgnwdlnipkgissveqklydtamptivtdrydfgdm
pvfcidsedaheindgisieeldgvrsrihihiadpaglfpesfdytksgisddvlrvsl
krafttylpdlvvpmlpksfcnradlgkhdrktetisfsfelvnkedgglhvdydtfqvr
lgivsnfpkvtydkvdsilngddnslpskqkkqlellhtlatkllhkrihddnavvfgdg
fnkglvslspdciptfydqsqtkstllvsefmiltnklcaaffqenkipgvyrcynglnl
gnqakaqfellkeniklgklpslkditkissqlsssfyspfplphkmigntayltvtspm
rrgpdlinhlqlhrflkklplcfkqeyldqyvwsfqaradilkifqrhsstywtlkhleq
sgtkthdvivtsvpqngtvnclfpeysyargtlkldpamkkiprigdtirhckvesihpl
dgiltlthvn

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.