PDB entry 6f2s

View 6f2s on RCSB PDB site
Description: cryoem structure of ageratum yellow vein virus (ayvv)
Deposited on 2017-11-27, released 2018-06-27
The last revision was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: EM
Resolution: 3.3 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Ageratum yellow vein virus [TaxId:44560]
    Gene: V1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: capsid protein
    Species: Ageratum yellow vein virus [TaxId:44560]
    Gene: V1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: capsid protein
    Species: Ageratum yellow vein virus [TaxId:44560]
    Gene: V1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: capsid protein
    Species: Ageratum yellow vein virus [TaxId:44560]
    Gene: V1
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: capsid protein
    Species: Ageratum yellow vein virus [TaxId:44560]
    Gene: V1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: capsid protein
    Species: Ageratum yellow vein virus [TaxId:44560]
    Gene: V1
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: capsid protein
    Species: Ageratum yellow vein virus [TaxId:44560]
    Gene: V1
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: coat protein subunit H
    Species: Ageratum yellow vein virus [TaxId:44560]
    Gene: V1
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: coat protein subunit I
    Species: Ageratum yellow vein virus [TaxId:44560]
    Gene: V1
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: capsid protein
    Species: Ageratum yellow vein virus [TaxId:44560]
    Gene: V1
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: capsid protein
    Species: Ageratum yellow vein virus [TaxId:44560]
    Gene: V1
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: ssDNA loop
    Species: Ageratum yellow vein virus [TaxId:44560]
  • Chain 'M':
    Compound: ssDNA loop
    Species: Ageratum yellow vein virus [TaxId:44560]
  • Chain 'N':
    Compound: ssDNA loop
    Species: Ageratum yellow vein virus [TaxId:44560]
  • Chain 'O':
    Compound: ssDNA loop
    Species: Ageratum yellow vein virus [TaxId:44560]
  • Chain 'P':
    Compound: ssDNA loop
    Species: Ageratum yellow vein virus [TaxId:44560]
  • Chain 'Q':
    Compound: ssDNA loop
    Species: Ageratum yellow vein virus [TaxId:44560]
  • Chain 'R':
    Compound: ssDNA loop
    Species: Ageratum yellow vein virus [TaxId:44560]
  • Chain 'S':
    Compound: ssDNA loop associated with subunit H
    Species: Ageratum yellow vein virus [TaxId:44560]
  • Chain 'T':
    Compound: ssDNA loop
    Species: Ageratum yellow vein virus [TaxId:44560]
  • Chain 'U':
    Compound: ssDNA loop
    Species: Ageratum yellow vein virus [TaxId:44560]
  • Chain 'V':
    Compound: ssDNA loop
    Species: Ageratum yellow vein virus [TaxId:44560]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6f2sA (A:)
    pdvpkgcegpckvqsyeqrhdishvgkvlcvsdvtrgnglthrvgkrfcvksvyvlgkiw
    mdeniktknhtntvmfylvrdrrpfgtamdfgqvfnmydnepstatikndlrdryqvlrk
    ftstvtggqyaskeqalvkkfmkinnyvvynhqeaakydnhtenalllymacthasnpvy
    atlkiriyfydsvqn
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6f2sB (B:)
    pdvpkgcegpckvqsyeqrhdishvgkvlcvsdvtrgnglthrvgkrfcvksvyvlgkiw
    mdeniktknhtntvmfylvrdrrpfgtamdfgqvfnmydnepstatikndlrdryqvlrk
    ftstvtggqyaskeqalvkkfmkinnyvvynhqeaakydnhtenalllymacthasnpvy
    atlkiriyfydsvqn
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6f2sC (C:)
    pdvpkgcegpckvqsyeqrhdishvgkvlcvsdvtrgnglthrvgkrfcvksvyvlgkiw
    mdeniktknhtntvmfylvrdrrpfgtamdfgqvfnmydnepstatikndlrdryqvlrk
    ftstvtggqyaskeqalvkkfmkinnyvvynhqeaakydnhtenalllymacthasnpvy
    atlkiriyfydsvqn
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6f2sD (D:)
    pdvpkgcegpckvqsyeqrhdishvgkvlcvsdvtrgnglthrvgkrfcvksvyvlgkiw
    mdeniktknhtntvmfylvrdrrpfgtamdfgqvfnmydnepstatikndlrdryqvlrk
    ftstvtggqyaskeqalvkkfmkinnyvvynhqeaakydnhtenalllymacthasnpvy
    atlkiriyfydsvqn
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6f2sE (E:)
    pdvpkgcegpckvqsyeqrhdishvgkvlcvsdvtrgnglthrvgkrfcvksvyvlgkiw
    mdeniktknhtntvmfylvrdrrpfgtamdfgqvfnmydnepstatikndlrdryqvlrk
    ftstvtggqyaskeqalvkkfmkinnyvvynhqeaakydnhtenalllymacthasnpvy
    atlkiriyfydsvqn
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6f2sF (F:)
    pdvpkgcegpckvqsyeqrhdishvgkvlcvsdvtrgnglthrvgkrfcvksvyvlgkiw
    mdeniktknhtntvmfylvrdrrpfgtamdfgqvfnmydnepstatikndlrdryqvlrk
    ftstvtggqyaskeqalvkkfmkinnyvvynhqeaakydnhtenalllymacthasnpvy
    atlkiriyfydsvqn
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6f2sG (G:)
    pdvpkgcegpckvqsyeqrhdishvgkvlcvsdvtrgnglthrvgkrfcvksvyvlgkiw
    mdeniktknhtntvmfylvrdrrpfgtamdfgqvfnmydnepstatikndlrdryqvlrk
    ftstvtggqyaskeqalvkkfmkinnyvvynhqeaakydnhtenalllymacthasnpvy
    atlkiriyfydsvqn
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6f2sH (H:)
    nrrrtwtnrpmyrkprlyrmyrtpdvpkgcegpckvqsyeqrhdishvgkvlcvsdvtrg
    nglthrvgkrfcvksvyvlgkiwmdeniktknhtntvmfylvrdrrpfgtamdfgqvfnm
    ydnepstatikndlrdryqvlrkftstvtggqyaskeqalvkkfmkinnyvvynhqeaak
    ydnhtenalllymacthasnpvyatlkiriyfydsvqn
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6f2sI (I:)
    rlyrmyrtpdvpkgcegpckvqsyeqrhdishvgkvlcvsdvtrgnglthrvgkrfcvks
    vyvlgkiwmdeniktknhtntvmfylvrdrrpfgtamdfgqvfnmydnepstatikndlr
    dryqvlrkftstvtggqyaskeqalvkkfmkinnyvvynhqeaakydnhtenalllymac
    thasnpvyatlkiriyfydsvqn
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6f2sJ (J:)
    pdvpkgcegpckvqsyeqrhdishvgkvlcvsdvtrgnglthrvgkrfcvksvyvlgkiw
    mdeniktknhtntvmfylvrdrrpfgtamdfgqvfnmydnepstatikndlrdryqvlrk
    ftstvtggqyaskeqalvkkfmkinnyvvynhqeaakydnhtenalllymacthasnpvy
    atlkiriyfydsvqn
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6f2sK (K:)
    pdvpkgcegpckvqsyeqrhdishvgkvlcvsdvtrgnglthrvgkrfcvksvyvlgkiw
    mdeniktknhtntvmfylvrdrrpfgtamdfgqvfnmydnepstatikndlrdryqvlrk
    ftstvtggqyaskeqalvkkfmkinnyvvynhqeaakydnhtenalllymacthasnpvy
    atlkiriyfydsvqn
    

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    No sequence available.

  • Chain 'T':
    No sequence available.

  • Chain 'U':
    No sequence available.

  • Chain 'V':
    No sequence available.