PDB entry 6f2a

View 6f2a on RCSB PDB site
Description: crystal structure of the complex fe(ii)/alpha-ketoglutarate dependent dioxygenase kdo1 with fe(ii)/lysine
Deposited on 2017-11-24, released 2018-11-14
The last revision was dated 2018-11-21, with a file datestamp of 2018-11-16.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-lysine 3-hydroxylase
    Species: Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) [TaxId:479433]
    Gene: Caci_0231
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: L-lysine 3-hydroxylase
    Species: Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) [TaxId:479433]
    Gene: Caci_0231
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: L-lysine 3-hydroxylase
    Species: Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) [TaxId:479433]
    Gene: Caci_0231
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: L-lysine 3-hydroxylase
    Species: Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) [TaxId:479433]
    Gene: Caci_0231
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FE2, LYS, ACY, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f2aA (A:)
mknlsayevyespktsgesrteavseaafesdpevsailvltsseastlervadlvtaha
lyaahdfcaqaqlaaaelpsrvvarlqefawgdmneghllikglpqvrslpptptsnvha
vaattpmsryqalinecvgrmiayeaeghghtfqdmvpsamsahsqtslgsavelelhte
qafsplrpdfvslaclrgdpraltylfsarqlvatlttqeiamlrepmwtttvdesflae
grtfllgfergpipilsgadddpfivfdqdlmrgisapaqelqqtvirayyaervshcla
pgemllidnrravhgrsifaprfdgadrflsrsfivadgsrsrharssfgrvvsarfs

    Sequence, based on observed residues (ATOM records):
    >6f2aA (A:)
evsailvltsseastlervadlvtahalyaahdfcaqaqlaaaelpsrvvarlqefawgd
mneghllikglpqvrslpptptsnvhavaattpmsryqalinecvgrmiayeaeghghtf
qdmvpsamsahsqtslgsavelelhteqafsplrpdfvslaclrgdpraltylfsarqlv
atlttqeiamlrepmwtttvdesflaegrtfllgfergpipilsgadddpfivfdqdlmr
gisapaqelqqtvirayyaervshclapgemllidnrravhgrsifaprfdgadrflsrs
fivadgsrsrharssfgrvvsarfs

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f2aB (B:)
mknlsayevyespktsgesrteavseaafesdpevsailvltsseastlervadlvtaha
lyaahdfcaqaqlaaaelpsrvvarlqefawgdmneghllikglpqvrslpptptsnvha
vaattpmsryqalinecvgrmiayeaeghghtfqdmvpsamsahsqtslgsavelelhte
qafsplrpdfvslaclrgdpraltylfsarqlvatlttqeiamlrepmwtttvdesflae
grtfllgfergpipilsgadddpfivfdqdlmrgisapaqelqqtvirayyaervshcla
pgemllidnrravhgrsifaprfdgadrflsrsfivadgsrsrharssfgrvvsarfs

    Sequence, based on observed residues (ATOM records):
    >6f2aB (B:)
vsailvltsseastlervadlvtahalyaahdfcaqaqlaaaelpsrvvarlqefawgdm
neghllikglpqvrslpptptsnvhavaattpmsryqalinecvgrmiayeaeghghtfq
dmvpsamsahsqtslgsavelelhteqafsplrpdfvslaclrgdpraltylfsarqlva
tlttqeiamlrepmwtttvdesflaegrtfllgfergpipilsgadddpfivfdqdlmrg
isapaqelqqtvirayyaervshclapgemllidnrravhgrsifaprfdgadrflsrsf
ivadgsrsrharssfgrvvsarfs

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6f2aC (C:)
mknlsayevyespktsgesrteavseaafesdpevsailvltsseastlervadlvtaha
lyaahdfcaqaqlaaaelpsrvvarlqefawgdmneghllikglpqvrslpptptsnvha
vaattpmsryqalinecvgrmiayeaeghghtfqdmvpsamsahsqtslgsavelelhte
qafsplrpdfvslaclrgdpraltylfsarqlvatlttqeiamlrepmwtttvdesflae
grtfllgfergpipilsgadddpfivfdqdlmrgisapaqelqqtvirayyaervshcla
pgemllidnrravhgrsifaprfdgadrflsrsfivadgsrsrharssfgrvvsarfs

    Sequence, based on observed residues (ATOM records):
    >6f2aC (C:)
pevsailvltsseastlervadlvtahalyaahdfcaqaqlaaaelpsrvvarlqefawg
dmneghllikglpqvrslpptptsnvhavaattpmsryqalinecvgrmiayeaeghght
fqdmvpsamsahsqtslgsavelelhteqafsplrpdfvslaclrgdpraltylfsarql
vatlttqeiamlrepmwtttvdesflaegrtfllgfergpipilsgadddpfivfdqdlm
rgisapaqelqqtvirayyaervshclapgemllidnrravhgrsifaprfdgadrflsr
sfivadgsrsrharssfgrvvsarfs

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6f2aD (D:)
mknlsayevyespktsgesrteavseaafesdpevsailvltsseastlervadlvtaha
lyaahdfcaqaqlaaaelpsrvvarlqefawgdmneghllikglpqvrslpptptsnvha
vaattpmsryqalinecvgrmiayeaeghghtfqdmvpsamsahsqtslgsavelelhte
qafsplrpdfvslaclrgdpraltylfsarqlvatlttqeiamlrepmwtttvdesflae
grtfllgfergpipilsgadddpfivfdqdlmrgisapaqelqqtvirayyaervshcla
pgemllidnrravhgrsifaprfdgadrflsrsfivadgsrsrharssfgrvvsarfs

    Sequence, based on observed residues (ATOM records):
    >6f2aD (D:)
vsailvltsseastlervadlvtahalyaahdfcaqaqlaaaelpsrvvarlqefawgdm
neghllikglpqvrslpptptsnvhavaattpmsryqalinecvgrmiayeaeghghtfq
dmvpsamsahsqtslgsavelelhteqafsplrpdfvslaclrgdpraltylfsarqlva
tlttqeiamlrepmwtttvdesflaegrtfllgfergpipilsgadddpfivfdqdlmrg
isapaqelqqtvirayyaervshclapgemllidnrravhgrsifaprfdgadrflsrsf
ivadgsrsrharssfgrvvsarfs