PDB entry 6f0k

View 6f0k on RCSB PDB site
Description: alternative complex iii
Deposited on 2017-11-20, released 2018-05-09
The last revision was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: EM
Resolution: 3.87 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytochrome c family protein
    Species: Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) [TaxId:518766]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Fe-S-cluster-containing hydrogenase
    Species: Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) [TaxId:518766]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Polysulphide reductase NrfD
    Species: Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) [TaxId:518766]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: ActD
    Species: Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) [TaxId:518766]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit
    Species: Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) [TaxId:518766]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: ActF
    Species: Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) [TaxId:518766]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: ActH
    Species: Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) [TaxId:518766]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HEC, F3S, SF4

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6f0kA (A:)
    mpqifsrktnrlpalslagsvfggvlavflvwyyfspefyevgyappyshrihvgklgld
    crychnwvevsdkanipptqtcinchsqiltdsprlqavrdswatdrsiewvkvhhlpdy
    ahfshashvnngvgcetchgridqmdvvrlveplsmgwclechrqpelylrpqseittmg
    yqppadyiernlerirkegirpptncsachy
    

    Sequence, based on observed residues (ATOM records):
    >6f0kA (A:)
    fsrktnrlpalslagsvfggvlavflvwyyfspefyevgyappyshrihvgklgldcryc
    hnwvevsdkanipptqtcinchsqiltdsprlqavrdswatdrsiewvkvhhlpdyahfs
    hashvnngvgcetchgridqmdvvrlveplsmgwclechrqpelylrpqseittmgyqpp
    adyiernlerirkegirpptncsachy
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6f0kB (B:)
    mielpvvnpdgaetpgsgkrlwrstadlrrdpewvklahdefmpgvaeppsgtsrrqflq
    imgasmalagltacrrpvekilpyvrqpeeiipgiplyyatampfrgsvrpllveshegr
    ptkiegnpdhplsrgatgvfeqasllnlydpdrsqqvlrkgepaswgdfvqfarslaaea
    gtkrlavlcepsssptlaalrrelerryaqvrwvtyrpegddhealglqqafgrpvrary
    rfsearvivsldadflgptdrnfventrefaasrrmerpedeisrlyviestytvtggma
    dhrlrlragdipafaaalaaelgvgelreagarfaghpyvveiardlraagargvvlage
    tqppavhalcavindllgslgrtvilhaldepataqhaalaelvqamqagavdallllnv
    npvydapaalgfaealaqvpevihlglhvdetarrstwhlpsthyleawgdgraydgtls
    viqpliaplyeaahsplevlallatgeeqsaydlvrntwrrllagrgafeqawqrvlhdg
    flpdsgyptvslrpnrqaladwpqaaegglevvfrldptvldgsfannawaqelpdpitk
    ivwdnvailspktaaalgvkaeyhkgvyiadvielsldgravelpvwvlpghpddsitvy
    lgygreitstrperktpffdlddytdiyghgaiatgvgvnvaplrrpdntwvaygaqvrk
    tgrtykivttqdhgsmvgrplvrlatveefrknpdfakeaeppleglepwdqyptlween
    hpskqpafqdsdyyrnqwamvidlnactgcnacivacdsennipmvgknevgrgremhwl
    ridryfvsdeahaddpqivvqpvpcmhcenapcesvcpvaatvhspdglnemvynrcigt
    rycsnncpykvrrfnwfnwvktlpiqvqmaqnpdvtvrfrgvmekctycvqrireaqrqa
    niekrplrdgevktacqqacpaeaitfgdlndpnnavvkqrqnarryemlaalnvkprts
    ylaritnpnprlleqepva
    

    Sequence, based on observed residues (ATOM records):
    >6f0kB (B:)
    rrpvekilpyvrqpeeiipgiplyyatampfrgsvrpllveshegrptkiegnpdhplsr
    gatgvfeqasllnlydpdrsqqvlrkgepaswgdfvqfarslaaeagtkrlavlcepsss
    ptlaalrrelerryaqvrwvtyrpegddhealglqqafgrpvraryrfsearvivsldad
    flgptdrnfventrefaasrrmerpedeisrlyviestytvtggmadhrlrlragdipaf
    aaalaaelgvgelreagarfaghpyvveiardlraagargvvlagetqppavhalcavin
    dllgslgrtvilhaldepataqhaalaelvqamqagavdallllnvnpvydapaalgfae
    alaqvpevihlglhvdetarrstwhlpsthyleawgdgraydgtlsviqpliaplyeaah
    splevlallatgeeqsaydlvrntwrrllagrgafeqawqrvlhdgflpdsgyptvslrp
    nrqaladwpqaaegglevvfrldptvldgsfannawaqelpdpitkivwdnvailspkta
    aalgvkaeyhkgvyiadvielsldgravelpvwvlpghpddsitvylgygreitstrper
    ktpffdlddytdiyghgaiatgvgvnvaplrrpdntwvaygaqvrktgrtykivttqdhg
    smvgrplvrlatveefrknpdfakeaeppleglepwdqyptlweenhpskqpafqdsdyy
    rnqwamvidlnactgcnacivacdsennipmvgknevgrgremhwlridryfvsdeahad
    dpqivvqpvpcmhcenapcesvcpvaatvhspdglnemvynrcigtrycsnncpykvrrf
    nwfnwvktlpiqvqmaqnpdvtvrfrgvmekctycvqrireaqrqaniekrplrdgevkt
    acqqacpaeaitfgdlndpnnavvkqrqnarryemlaalnvkprtsylaritnpnprlle
    q
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6f0kC (C:)
    mahatkdlsalartdeevlvqggltfhditelvaqhtekktpkawwaafsvaflgmltlv
    amlayqvwngvgvwgnnipvgwgwpivnfvfwvgighagtlisailflfrqrwrtsinra
    aeamtifavicalifptfhvgrvwaiywtlpipnqmemwpqfkspllwdvfavssyfivs
    lvfwyvglipdlatlrdraalmgrrlrakilgffalgwcganrhwrnyekvymllaglat
    plvlsvhsvvsfdfavsiipgwhttifppyfvagaifsgfamvvtlmviarkayglenvi
    tidhlekmniimlvtgtmvgfayiteffiawysgvpyeqyafinratgpyawaywtmmsc
    nlifpqffwikklrrnipfmfiasivvnigmwferfvititslhrdylpsswdyfvptwv
    dvltligsfglfftlfllflrfvpmvaiaevkgvlpeadphfyethgdghsrpaevqvnr
    grss
    

    Sequence, based on observed residues (ATOM records):
    >6f0kC (C:)
    vlvqggltfhditelvaqhtekktpkawwaafsvaflgmltlvamlayqvwngvgvwgnn
    ipvgwgwpivnfvfwvgighagtlisailflfrqrwrtsinraaeamtifavicalifpt
    fhvgrvwaiywtlpipnqmemwpqfkspllwdvfavssyfivslvfwyvglipdlatlrd
    raalmgrrlrakilgffalgwcganrhwrnyekvymllaglatplvlsvhsvvsfdfavs
    iipgwhttifppyfvagaifsgfamvvtlmviarkayglenvitidhlekmniimlvtgt
    mvgfayiteffiawysgvpyeqyafinratgpyawaywtmmscnlifpqffwikklrrni
    pfmfiasivvnigmwferfvititslhrdylpsswdyfvptwvdvltligsfglfftlfl
    lflrfvpmvaiaevkgvlpeadphf
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6f0kD (D:)
    mlkellrslkasmgiyeardgsiygllaefsdpaallhaarqvrkagyrhfdahspfpih
    gmdeamglgnskvafitfftgtiagfalawwmqwwmgavdyplnisgkpffalppsvpii
    feltilfsalagvatmlalnglprpynplfysknfmrvtddgfflfvaasdpkfdptatr
    qlleqlggynieviedrgeedvtpatapaaeaavtts
    

    Sequence, based on observed residues (ATOM records):
    >6f0kD (D:)
    iygllaefsdpaallhaarqvrkagyrhfdahspfpihgmdeamglgnskvafitfftgt
    iagfalawwmqwwmgavdyplnisgkpffalppsvpiifeltilfsalagvatmlalngl
    prpynplfysknfmrvtddgfflfvaasdpkfdptatrqlleqlggyniev
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6f0kE (E:)
    mqnitamprtiwtglllglllagcrgmisskppvhpnlnmdfqekfeaqelnpffadrra
    mrppvpgtvprgllkedtpfyfgktadgayveripvavtpelvargreryniycavchgq
    agdgqgiimrgnygytpapsfhddrlrnvedgyifdvishgvrnmpayghqipvadrwai
    vayvralqrsqhataadvpeevrarlqge
    

    Sequence, based on observed residues (ATOM records):
    >6f0kE (E:)
    isskppvhpnlnmdfqekfeaqelnpffadrramrppvpgtvprgllkedtpfyfgktad
    gayveripvavtpelvargreryniycavchgqagdgqgiimrgnygytpapsfhddrlr
    nvedgyifdvishgvrnmpayghqipvadrwaivayvralqrsqhataadvpeevrarlq
    ge
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6f0kF (F:)
    maevkangfpgwlldplrptrekaepryrlpedvriwavplaigvgllivslvgwaidar
    qfyfsylvgwtfcltlalgslffvmiqhltraqwvvavrrlpealvwtfpvlivlfipil
    fglhdlyhwthhelydpsspeydpilagkhaylnvpfflvriafyffiwtllayklytls
    vrqdvdpdpsipaqqrkvsawgmplygvtvafasydflmsldphwystifgvyffagsff
    valgfittcyailvrrgtlqgivraphfqdlgklmfgftafwayiafsqymliwygnlpe
    etlwyrhrlehgwevlsqvliwghfvlpflillpwaakrtpvlvgtmgiwfaiihwidlf
    wvampvlhtehmtfhwldvtcwlglfgvvvglffyrisrhslvpqndpylarslalh
    

    Sequence, based on observed residues (ATOM records):
    >6f0kF (F:)
    riwavplaigvgllivslvgwaidarqfyfsylvgwtfcltlalgslffvmiqhltraqw
    vvavrrlpealvwtfpvlivlfipilfglhdlyhwthhelydpsspeydpilagkhayln
    vpfflvriafyffiwtllayklytlsvrqdvdpdpsipaqqrkvsawgmplygvtvafas
    ydflmsldphwystifgvyffagsffvalgfittcyailvrrgtlqgivraphfqdlgkl
    mfgftafwayiafsqymliwygnlpeetlwyrhrlehgwevlsqvliwghfvlpflillp
    waakrtpvlvgtmgiwfaiihwidlfwvampvlhtehmtfhwldvtcwlglfgvvvglff
    yrisrhslvpqndpylarslal
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6f0kH (H:)
    mkrypgligllvvlvsvagcrfygypggvaltlaqieaaseqvaqdleqalaelealrll
    arrdetlapyvaqyeaileahqqavlefehwkeqvaahpgdyrranrtlgaitarheall
    qqyadvawavaqhvnpallaraytssgprfffyvvppqyarqvneqavpplqvvrylaaq
    ls
    

    Sequence, based on observed residues (ATOM records):
    >6f0kH (H:)
    ypggvaltlaqieaaseqvaqdleqalaelealrllarrdetlapyvaqyeaileahqqa
    vlefehwkeqvaahpgdyrranrtlgaitarheallqqyadvawavaqhvnpallarayt
    ssgprfffyvvppqyarqvneqavpplqvvrylaaq